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Rosetta 3 - General
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
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2,593 |
by brspurri Thu, 2020-08-20 13:22 |
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RestrictToRepackingRLT and PreventRepackingRLT by coomteng@gmail.com » Mon, 2018-03-05 11:19 |
2 |
2,588 |
by coomteng@gmail.com Tue, 2018-03-06 02:31 |
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prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
1 |
2,584 |
by smlewis Mon, 2014-04-21 06:47 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,579 |
by coxford Mon, 2014-04-21 06:47 |
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runtime error by exchhattu » Wed, 2010-03-03 02:54 |
2 |
2,576 |
by exchhattu Mon, 2014-04-21 06:47 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
1 |
2,574 |
by rmoretti Mon, 2014-04-21 06:47 |
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the problem in making fragments by croshong » Thu, 2009-12-03 17:15 |
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2,571 |
by smlewis Mon, 2014-04-21 06:47 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,567 |
by aloshbau Sun, 2016-02-14 20:14 |
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Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
7 |
2,566 |
by Kihang _Youn Thu, 2022-03-10 16:30 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
2,559 |
by smlewis Wed, 2019-12-04 13:07 |
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Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
1 |
2,558 |
by smlewis Mon, 2014-04-21 06:47 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
2 |
2,558 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
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2,553 |
by londonir Mon, 2014-04-21 06:47 |
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Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
1 |
2,551 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
3 |
2,551 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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reporting IteratedConvergence status by sdh_h » Thu, 2016-08-04 10:05 |
2 |
2,548 |
by sdh_h Thu, 2016-08-04 11:22 |
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mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
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2,548 |
by dnasmith Mon, 2014-04-21 06:47 |
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"unrecognized aa ACT" by einew » Sat, 2011-08-27 14:58 |
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2,541 |
by smlewis Mon, 2014-04-21 06:47 |
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angle constraints by gw » Tue, 2011-07-19 07:49 |
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2,541 |
by smlewis Mon, 2014-04-21 06:47 |
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Snugdock and antibody modelling by sudhar » Thu, 2010-06-10 08:13 |
1 |
2,537 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,533 |
by jhbrown Mon, 2014-04-21 06:47 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
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2,533 |
by smlewis Mon, 2014-04-21 06:47 |
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Generating Protein/NA decoys by rbeier1 » Mon, 2016-01-11 03:25 |
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2,522 |
by rmoretti Thu, 2016-04-28 16:25 |
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Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,519 |
by aloshbau Mon, 2015-12-14 23:30 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
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2,516 |
by smlewis Mon, 2014-04-21 06:47 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
2 |
2,505 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
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problems with cluster program by umeshghosh » Thu, 2010-04-08 07:45 |
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2,504 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG average energy by dave » Wed, 2013-04-03 03:36 |
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2,503 |
by rmoretti Mon, 2014-04-21 06:47 |
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Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
2 |
2,503 |
by DmitriiN Wed, 2016-06-01 15:46 |
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Rosetta Antibody: Unable to open file and terminates by denatured » Thu, 2019-12-12 11:26 |
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2,502 |
by denatured Fri, 2019-12-13 11:19 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,495 |
by Anonymous Mon, 2014-04-21 06:47 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
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2,491 |
by achambe Wed, 2016-01-13 10:46 |
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could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
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2,487 |
by smlewis Mon, 2014-04-21 06:47 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
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2,486 |
by matteoferla Thu, 2019-08-22 05:39 |
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pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
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2,485 |
by smlewis Mon, 2014-04-21 06:47 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,477 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
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2,476 |
by smlewis Mon, 2014-04-21 06:47 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
3 |
2,471 |
by matteoferla Thu, 2020-05-14 07:01 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
3 |
2,470 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
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2,466 |
by smlewis Fri, 2014-11-07 12:03 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
2,466 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
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2,464 |
by smlewis Mon, 2014-04-21 06:47 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
2 |
2,459 |
by sgaray Fri, 2021-06-25 11:26 |
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About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
1 |
2,449 |
by smlewis Mon, 2014-04-21 06:47 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
2 |
2,448 |
by Martin Floor Tue, 2018-08-28 13:21 |
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score function for centroid mode by MarkW » Thu, 2015-02-26 08:56 |
1 |
2,441 |
by jadolfbr Fri, 2015-02-27 11:08 |
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MoveMap file for backrub by jiyongpark.77 » Sat, 2009-07-18 03:53 |
1 |
2,441 |
by smlewis Mon, 2014-04-21 06:47 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
1 |
2,441 |
by rmoretti Thu, 2015-04-02 12:52 |
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Error message: ArchiveManager spinning down by Lati » Sun, 2016-01-24 02:42 |
1 |
2,440 |
by smlewis Sun, 2016-01-24 03:24 |
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Entropy calculation by abdullah_ahmed » Wed, 2010-12-01 07:52 |
1 |
2,438 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
1 |
2,438 |
by smlewis Mon, 2014-04-21 06:47 |
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start pose and native pose don't match in lengh by zhisheng » Thu, 2011-12-15 10:23 |
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2,432 |
by smlewis Mon, 2014-04-21 06:47 |
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How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
1 |
2,432 |
by rmoretti Mon, 2014-04-21 06:47 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
1 |
2,431 |
by Anonymous Mon, 2014-04-21 06:47 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
1 |
2,428 |
by smlewis Mon, 2014-04-21 06:47 |
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About RosettaScript examples by jiongzhang » Thu, 2012-03-08 10:50 |
1 |
2,427 |
by smlewis Mon, 2014-04-21 06:47 |
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All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
1 |
2,426 |
by smlewis Mon, 2014-04-21 06:47 |
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Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
1 |
2,424 |
by smlewis Mon, 2014-04-21 06:47 |
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Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
2 |
2,421 |
by mao_x Thu, 2019-08-08 01:37 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
1 |
2,420 |
by IAndre Mon, 2014-04-21 06:47 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
2,417 |
by rmoretti Sat, 2019-03-30 12:12 |
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Binary silent Output file reading problem by wlzhang » Sun, 2014-04-20 17:47 |
1 |
2,412 |
by wlzhang Sun, 2014-04-20 18:17 |
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Calibur not listing cluster members by Swillard » Sun, 2018-07-01 13:07 |
2 |
2,412 |
by benhardy Fri, 2021-05-07 07:22 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
2 |
2,411 |
by eminegenetics Wed, 2018-07-18 13:48 |
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nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
1 |
2,409 |
by rmoretti Fri, 2015-07-03 13:04 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
2 |
2,405 |
by lah435 Mon, 2017-04-03 19:50 |
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I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
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2,398 |
by smlewis Mon, 2014-04-21 06:47 |
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Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
2 |
2,396 |
by ac.research Fri, 2017-03-31 07:36 |
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Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
1 |
2,396 |
by rmoretti Thu, 2014-10-16 10:33 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
2 |
2,392 |
by matteoferla Wed, 2020-01-29 12:18 |
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where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
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2,392 |
by smlewis Mon, 2014-04-21 06:47 |
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Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
1 |
2,387 |
by rmoretti Mon, 2014-07-07 08:08 |
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Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
1 |
2,387 |
by rmoretti Fri, 2016-10-14 16:43 |
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Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
0 |
2,387 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
1 |
2,387 |
by smlewis Mon, 2014-04-21 06:47 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
1 |
2,384 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta movie. by exchhattu » Mon, 2009-09-14 21:02 |
1 |
2,381 |
by smlewis Mon, 2014-04-21 06:47 |
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Derivative of the Energy function? by MkM » Fri, 2010-01-15 08:00 |
1 |
2,370 |
by smlewis Mon, 2014-04-21 06:47 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
2 |
2,366 |
by CameronJA Wed, 2022-01-19 20:50 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
1 |
2,363 |
by rmoretti Tue, 2014-07-01 12:21 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
2 |
2,362 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
1 |
2,362 |
by smlewis Mon, 2014-04-21 06:47 |
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ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
1 |
2,359 |
by rmoretti Tue, 2016-07-12 08:47 |
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total score by score » Mon, 2010-05-03 02:03 |
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2,359 |
by smlewis Mon, 2014-04-21 06:47 |
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Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
1 |
2,351 |
by jadolfbr Fri, 2014-10-31 08:55 |
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Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
1 |
2,346 |
by smlewis Mon, 2014-04-21 06:47 |
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ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
1 |
2,345 |
by rmoretti Mon, 2014-12-15 02:37 |
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ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
1 |
2,339 |
by rmoretti Wed, 2018-01-31 14:57 |
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Problem with run_lips.pl script by wdyrka » Tue, 2010-09-07 11:07 |
1 |
2,335 |
by smlewis Mon, 2014-04-21 06:47 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
2 |
2,330 |
by duz Thu, 2021-04-01 09:34 |
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The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
1 |
2,328 |
by rmoretti Sat, 2018-03-17 10:43 |
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Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
2 |
2,326 |
by ac.research Fri, 2017-08-18 00:53 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
2,323 |
by rmoretti Mon, 2014-04-21 06:47 |
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rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
1 |
2,318 |
by rmoretti Mon, 2014-04-21 06:48 |
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"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
1 |
2,315 |
by rmoretti Fri, 2016-10-14 15:46 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
1 |
2,313 |
by rmoretti Mon, 2016-09-05 09:39 |
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Bug in cluster? by nitroamos » Mon, 2011-11-21 12:53 |
1 |
2,312 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
3 |
2,309 |
by ylwang Sat, 2019-11-23 06:26 |
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Parallel computing? by mansi » Thu, 2010-08-19 08:39 |
1 |
2,307 |
by smlewis Mon, 2014-04-21 06:47 |
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mcm for Docking in Rosetta3.1 by dyq » Tue, 2010-01-12 13:44 |
1 |
2,306 |
by smlewis Mon, 2014-04-21 06:47 |
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