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Rosetta 3 - General

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Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
1,957 by achambe
Wed, 2016-01-13 10:46
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
1,957 by smlewis
Mon, 2014-04-21 06:47
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
1,954 by SergeyP
Thu, 2016-05-05 02:07
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
1,954 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,946 by Al52
Tue, 2015-12-01 18:22
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,945 by rmoretti
Thu, 2015-04-02 12:52
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
1,942 by msardejani
Wed, 2016-10-05 10:53
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
1,937 by smlewis
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
1,932 by Karol
Thu, 2016-05-12 07:58
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
1,926 by smlewis
Mon, 2014-04-21 06:47
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
1,922 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
1,921 by rmoretti
Mon, 2017-10-30 12:02
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,921 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
1,921 by matteoferla
Sat, 2020-03-21 09:14
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
1,918 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
1,915 by rmoretti
Wed, 2018-11-21 13:50
Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
1,905 by jadolfbr
Wed, 2019-06-12 20:17
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
1,905 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
1,904 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
1,902 by vmulligan
Thu, 2017-04-27 16:41
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
1,895 by smlewis
Mon, 2014-04-21 06:47
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
1,894 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
1,890 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,888 by smlewis
Sun, 2016-01-24 03:24
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
1,880 by matteoferla
Mon, 2019-12-23 07:24
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
1,879 by rmoretti
Tue, 2014-07-01 12:21
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
1,879 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
1,878 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
1,877 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
1,875 by maruhuang
Thu, 2019-09-26 18:55
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
1,867 by libai2098
Mon, 2014-04-21 06:47
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
1,867 by sdh_h
Thu, 2016-08-04 11:22
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
1,867 by smlewis
Mon, 2014-04-21 06:47
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
1,865 by rmoretti
Thu, 2014-10-16 10:33
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
1,865 by smlewis
Wed, 2018-04-18 19:03
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
1,864 by smlewis
Mon, 2014-04-21 06:47
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
1,862 by aloshbau
Mon, 2015-12-14 23:30
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
1,862 by aloshbau
Sun, 2016-02-14 20:14
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
1,861 by decrSTL
Tue, 2019-08-27 10:24
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
1,859 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
1,856 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,855 by smlewis
Fri, 2014-11-07 12:03
Normal topic Can I compare binding affinity of different ligands using Rosetta?
by zg148119@ohio.edu » Sun, 2020-12-06 11:30
4
1,853 by nannemdp
Fri, 2021-02-05 06:49
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
1,848 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
1,844 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
1,839 by htorres
Mon, 2018-02-05 06:53
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
1,836 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
1,834 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
1,834 by smlewis
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
1,834 by rmoretti
Fri, 2015-07-03 13:04
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
1,833 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
1,831 by wlzhang
Sun, 2014-04-20 18:17
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,828 by rmoretti
Fri, 2016-10-14 16:43
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
1,822 by smlewis
Mon, 2014-04-21 06:47
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
1,819 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
1,819 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,818 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
1,817 by DmitriiN
Wed, 2016-06-01 15:46
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
1,813 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
1,813 by rmoretti
Mon, 2014-04-21 06:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,813 by smlewis
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,808 by rmoretti
Mon, 2014-12-15 02:37
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,800 by smlewis
Mon, 2014-04-21 06:47
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
1,799 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
1,797 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
1,794 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,793 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
1,791 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
1,790 by rmoretti
Fri, 2016-10-14 15:46
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
1,784 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,783 by rmoretti
Tue, 2014-06-10 11:34
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,781 by smlewis
Mon, 2014-04-21 06:47
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
1,780 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,777 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,775 by rmoretti
Mon, 2014-06-09 10:05
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,767 by rmoretti
Tue, 2016-07-12 08:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
1,766 by smlewis
Mon, 2014-04-21 06:47
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,765 by jtmacd
Mon, 2014-04-21 06:47
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,762 by smlewis
Mon, 2014-04-21 06:47
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,762 by smlewis
Mon, 2014-04-21 06:48
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
1,760 by frichter
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,760 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
1,755 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,754 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,751 by albumns
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
1,749 by fred
Mon, 2014-04-21 06:47
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
1,745 by brspurri
Thu, 2020-08-20 13:22
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,744 by yuvals
Mon, 2014-10-06 15:02
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
1,734 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
1,734 by ac.research
Fri, 2017-03-31 07:36
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
1,731 by smlewis
Wed, 2018-04-04 10:42
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
1,729 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
1,728 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
1,726 by nawsad
Fri, 2014-06-20 02:48
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
1,723 by rmoretti
Wed, 2018-01-31 14:57
Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
1,718 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
1,718 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,718 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,713 by smlewis
Mon, 2014-04-21 06:47
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