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Rosetta 3 - General

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Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
3,395 by monica0569
Mon, 2014-04-21 06:47
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
3,698 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
3,541 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
4,525 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
2,966 by frits
Mon, 2014-04-21 06:48
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
4,345 by arthuc01
Mon, 2014-04-21 06:47
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
4,501 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
2,174 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
3,186 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
2,804 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
2,478 by ela
Thu, 2018-08-09 08:04
Normal topic Only 430 models are generated for membrane prediction
by justin » Wed, 2010-01-06 00:04
3
2,760 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
4,185 by pholland
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
3,004 by eunwook
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
3,398 by cneale
Fri, 2014-03-21 18:13
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
3
1,480 by matteoferla
Thu, 2020-05-14 07:01
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
2,805 by smlewis
Mon, 2016-08-22 10:28
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
2,035 by renedominik
Mon, 2018-06-04 00:04
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
3,984 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
2,421 by ssrb
Tue, 2018-03-06 14:15
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
2,982 by alejandro
Mon, 2014-04-21 06:47
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15
3
3,204 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
3,732 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
2,673 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
2,510 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
2,571 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
2,576 by rmoretti
Mon, 2015-05-25 11:00
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
3,220 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
4,136 by smlewis
Mon, 2014-04-21 06:47
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
2,891 by rmoretti
Mon, 2018-01-15 15:34
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
3,432 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
2,602 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
1,917 by rmoretti
Wed, 2018-11-21 13:50
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
1,924 by rmoretti
Mon, 2017-10-30 12:02
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
1,486 by ylwang
Sat, 2019-11-23 06:26
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
3,227 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
2,785 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
2,489 by msun
Mon, 2014-04-21 06:47
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
5,563 by rmoretti
Mon, 2014-11-03 16:39
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
2,969 by smlewis
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
2,796 by rmoretti
Thu, 2015-09-17 12:42
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
2,719 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
3,032 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
2,974 by rmoretti
Mon, 2014-04-21 06:48
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
2,907 by rmoretti
Mon, 2016-11-14 14:21
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
2,014 by matteoferla
Thu, 2018-10-04 01:30
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18
3
3,513 by smlewis
Mon, 2014-04-21 06:47
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
7,574 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
2,490 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Dock with MPI / PBS
by edpryor » Wed, 2012-09-05 11:04
3
5,461 by smlewis
Mon, 2014-04-21 06:47
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
2,750 by rmoretti
Sun, 2015-07-05 14:28
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
3,471 by rmoretti
Mon, 2015-02-09 11:21
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
2,688 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
2,473 by aaxx
Wed, 2019-11-06 01:44
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
3
2,193 by SergeyP
Mon, 2018-11-12 09:19
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
2,557 by smlewis
Fri, 2016-07-29 07:43
Normal topic Design constraints on pairs of residues
by SenyorDrew » Mon, 2017-10-02 07:25
3
2,358 by SenyorDrew
Mon, 2017-11-13 11:44
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
3,054 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
4,679 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30
3
2,786 by rmoretti
Wed, 2017-06-28 01:33
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
1,630 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
1,699 by smlewis
Mon, 2018-11-19 13:20
Normal topic how to use rosettadesign to do mutations on protein structure
by lqzhang » Thu, 2010-03-04 07:43
3
3,419 by vanita
Mon, 2014-04-21 06:47
Normal topic How to make a resfile
by dflaher » Fri, 2017-11-03 10:26
3
3,042 by smlewis
Wed, 2017-11-08 12:08
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
2,871 by rmoretti
Thu, 2014-04-10 07:38
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
1,992 by rmoretti
Thu, 2017-08-03 08:50
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
3,262 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
2,318 by matteoferla
Mon, 2018-02-26 02:05
Normal topic Biopython error in mac os x
by vinodh » Tue, 2012-06-12 12:23
3
3,404 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
1,615 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic first run of abinitio in rosetta 3.2 produces an error right away
by burkheadlab » Fri, 2011-03-04 22:50
3
2,931 by smlewis
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
4,245 by jurkm
Mon, 2014-04-21 06:47
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
2,884 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3.2 cluster application file-reading error
by mdyini » Wed, 2011-03-09 16:59
3
4,754 by smlewis
Mon, 2014-04-21 06:47
Normal topic Information about “membrane_highres_Menv_smooth.wts”
by Groros » Sun, 2011-10-02 03:59
3
3,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
4,616 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
915 by zhoubin
Mon, 2021-03-01 22:11
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
4,352 by smlewis
Mon, 2014-04-21 06:47
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
2,989 by smlewis
Mon, 2014-04-21 06:47
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
2,982 by rmoretti
Wed, 2015-12-16 11:22
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
2,728 by scombs
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have homology modeling protocol?
by SunH » Thu, 2010-11-04 07:36
3
3,483 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set up options in rosetta
by alejandro » Wed, 2011-04-06 02:08
3
4,155 by smlewis
Mon, 2014-04-21 06:47
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
1,998 by ylwang
Wed, 2018-11-14 03:03
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
2,967 by smlewis
Mon, 2014-04-21 06:47
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47
3
3,045 by tsjain
Mon, 2014-04-21 06:47
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
3,571 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Clarify ProteinInterfaceDesign “randomness”
by tsztain » Wed, 2019-02-27 09:41
3
1,544 by rmoretti
Sat, 2019-03-30 12:12
Normal topic Rotate chain
by Germanico » Sun, 2021-05-09 16:36
3
939 by danpf
Mon, 2021-05-10 10:04
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
2,470 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07
3
2,913 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
8,457 by rmoretti
Mon, 2015-02-09 09:09
Normal topic pmut and scoring
by ldlamini » Tue, 2021-09-14 00:46
3
749 by matteoferla
Mon, 2021-09-20 06:05
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
4,292 by smlewis
Mon, 2014-04-21 06:47
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
5,080 by lanselibai
Fri, 2014-12-12 10:27
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
3,695 by rmoretti
Tue, 2015-01-06 09:58
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
4,443 by albumns
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
4,060 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
4,269 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
3,698 by Martin Floor
Mon, 2014-04-21 06:47
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