You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
3 |
3,756 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
3 |
4,417 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
3 |
2,263 |
by ylwang Wed, 2018-11-14 03:03 |
|
|
Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
3 |
3,052 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
3 |
2,947 |
by scombs Mon, 2014-04-21 06:47 |
|
|
Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
3 |
322 |
by rmoretti Thu, 2022-09-29 00:15 |
|
|
How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
3 |
3,175 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
3 |
9,116 |
by rmoretti Mon, 2015-02-09 09:09 |
|
|
pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
3 |
1,237 |
by matteoferla Mon, 2021-09-20 06:05 |
|
|
Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
3 |
254 |
by rmoretti Mon, 2022-11-14 07:27 |
|
|
-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
3 |
3,328 |
by tsjain Mon, 2014-04-21 06:47 |
|
|
run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
3 |
3,816 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
1,812 |
by rmoretti Sat, 2019-03-30 12:12 |
|
|
Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
3 |
1,281 |
by danpf Mon, 2021-05-10 10:04 |
|
|
sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
3 |
2,758 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
|
|
Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
3 |
5,124 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
4,565 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
3 |
4,377 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
3 |
2,791 |
by rmoretti Mon, 2016-03-07 14:20 |
|
|
ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
3 |
3,145 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
3 |
3,201 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
4,470 |
by Ashafix Mon, 2014-04-21 06:48 |
|
|
Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
2,817 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
|
|
AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
3 |
2,979 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Explanations to membrane_abinitio options by justin » Wed, 2010-02-10 01:14 |
3 |
2,810 |
by justin Mon, 2014-04-21 06:47 |
|
|
I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
3 |
1,534 |
by ylwang Tue, 2020-03-24 19:35 |
|
|
Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
3 |
4,046 |
by dgront Mon, 2014-04-21 06:47 |
|
|
InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
3 |
2,283 |
by jadolfbr Wed, 2019-06-12 20:17 |
|
|
Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
3 |
3,289 |
by alejandro Mon, 2014-04-21 06:47 |
|
|
RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
3 |
645 |
by ssrb Tue, 2022-07-05 11:07 |
|
|
Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
3 |
4,038 |
by rmoretti Wed, 2015-08-12 15:03 |
|
|
# decoys of silent by fred » Wed, 2014-04-02 06:00 |
3 |
2,927 |
by fred Fri, 2014-04-04 11:34 |
|
|
How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
3 |
1,110 |
by matteoferla Fri, 2021-08-20 08:37 |
|
|
relax NOT CONVERGED by albumns » Thu, 2010-06-24 21:25 |
3 |
2,854 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
3 |
3,815 |
by einew Mon, 2014-04-21 06:47 |
|
|
Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
3 |
3,004 |
by phanvy Wed, 2014-07-02 23:32 |
|
|
score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
3,027 |
by everyday847 Tue, 2017-11-28 13:07 |
|
|
Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
3 |
3,064 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
3 |
2,045 |
by smlewis Wed, 2018-04-04 10:42 |
|
|
interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
3 |
3,039 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
3 |
2,534 |
by allan.ferrari Tue, 2017-01-03 05:02 |
|
|
small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
3 |
1,245 |
by rmoretti Wed, 2021-03-17 13:52 |
|
|
undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
3 |
192 |
by aniyaz Wed, 2023-01-11 01:24 |
|
|
Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
3,899 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
3 |
2,167 |
by smlewis Wed, 2018-04-18 19:03 |
|
|
I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
3 |
6,192 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
3 |
3,295 |
by harshkhare Mon, 2014-04-21 06:47 |
|
|
Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
3 |
2,074 |
by rmoretti Fri, 2018-08-03 08:42 |
|
|
Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
3 |
72 |
by rmoretti Mon, 2023-01-30 08:04 |
|
|
Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
3,887 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
4,637 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
3 |
2,910 |
by SenyorDrew Tue, 2016-06-14 06:43 |
|
|
Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
3 |
3,750 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
3 |
3,701 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
3 |
4,136 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
|
|
Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
3 |
5,046 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
3,860 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
3 |
3,194 |
by SergeyP Thu, 2016-02-04 00:07 |
|
|
Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
3 |
790 |
by csvajda Mon, 2022-03-07 07:46 |
|
|
Rosetta dock parallel by mahajanr » Tue, 2010-06-01 16:04 |
3 |
3,737 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
3 |
3,861 |
by jadolfbr Mon, 2014-04-21 21:05 |
|
|
Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
3 |
2,585 |
by smlewis Thu, 2016-06-30 08:44 |
|
|
Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
3 |
3,126 |
by einew Mon, 2014-04-21 06:47 |
|
|
Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
3 |
3,167 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
|
Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
3 |
5,840 |
by rmoretti Thu, 2014-07-17 09:21 |
|
|
error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
2,954 |
by rmoretti Sat, 2017-12-16 12:19 |
|
|
Problem with protein and ligand preparation before ligand docking. by zg148119@ohio.edu » Fri, 2021-02-05 06:47 |
3 |
1,645 |
by rmoretti Tue, 2021-02-09 09:22 |
|
|
score terms by qlj » Wed, 2013-07-03 08:00 |
3 |
3,747 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
3 |
3,486 |
by matteoferla Sat, 2017-08-05 07:18 |
|
|
Problem creating pNNMAKE.gnu by anirbanzz » Sat, 2010-04-17 02:14 |
3 |
3,640 |
by monica0569 Mon, 2014-04-21 06:47 |
|
|
why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
3 |
3,007 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
3 |
14,112 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
3 |
4,469 |
by Sandy Fri, 2015-08-07 15:49 |
|
|
is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
3 |
4,683 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
3 |
5,537 |
by rosend Fri, 2015-12-18 19:39 |
|
|
General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
3 |
2,650 |
by smlewis Tue, 2016-12-20 10:40 |
|
|
Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
3 |
2,816 |
by ac.research Sun, 2017-09-24 11:25 |
|
|
pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
3 |
1,078 |
by matteoferla Mon, 2022-01-10 06:44 |
|
|
force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
3 |
5,147 |
by masterofpuppets Tue, 2015-01-27 07:07 |
|
|
Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
3 |
3,604 |
by smlewis Thu, 2016-04-21 16:00 |
|
|
NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
3 |
3,075 |
by mpiuzzi Mon, 2014-04-21 06:47 |
|
|
RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
3 |
3,257 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
3 |
3,585 |
by rmoretti Wed, 2014-10-29 14:30 |
|
|
De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
3 |
1,924 |
by rmoretti Tue, 2019-10-22 07:05 |
|
|
Run protein-protein docking parallelly by mpi by Zehui Zhou » Thu, 2023-02-02 06:23 |
3 |
63 |
by Zehui Zhou Fri, 2023-02-03 05:51 |
|
|
NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
3 |
3,455 |
by franfdez Mon, 2014-04-21 06:47 |
|
|
how to identify selected interface residues by vijayaraj81 » Mon, 2014-03-31 01:40 |
3 |
3,676 |
by rmoretti Tue, 2014-04-01 08:12 |
|
|
ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
3 |
3,645 |
by rmoretti Mon, 2015-03-30 16:58 |
|
|
Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
3 |
2,528 |
by jcminerlanl Thu, 2017-07-06 09:22 |
|
|
Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
3 |
15,596 |
by charlie.strauss Fri, 2016-09-02 10:08 |
|
|
Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
3 |
3,278 |
by rmoretti Thu, 2015-04-30 16:09 |
|
|
Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
3 |
3,499 |
by rmoretti Mon, 2018-03-19 12:35 |
|
|
XML schema file taken from Rosie docking giving errors in Rosetta Scripts by Delfosse57 » Mon, 2022-07-18 10:51 |
3 |
452 |
by rmoretti Mon, 2022-07-18 11:56 |
|
|
loop modeling by MRH » Thu, 2013-08-22 23:19 |
3 |
3,599 |
by MRH Mon, 2014-04-21 06:48 |
|
|
build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
3 |
2,172 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
|
|
Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
3 |
3,959 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
3 |
3,932 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
3 |
4,848 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
dna_denovo by frits » Fri, 2013-07-12 06:12 |
3 |
3,274 |
by frits Mon, 2014-04-21 06:48 |
|
|
rosetta on snow leopard? by nitroamos » Thu, 2009-10-01 17:07 |
3 |
4,289 |
by nitroamos Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
