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Rosetta 3 - General
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Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
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1,573 |
by rmoretti Mon, 2017-03-06 08:37 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
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3,684 |
by freedman Mon, 2017-03-06 13:24 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
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4,559 |
by cannond Wed, 2017-03-08 03:00 |
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scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
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2,308 |
by SergeyP Fri, 2017-03-10 11:16 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
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1,725 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
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1,517 |
by smlewis Wed, 2017-03-22 14:02 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
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1,422 |
by rmoretti Tue, 2017-03-28 09:02 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
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3,998 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
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4,034 |
by pachecoj Wed, 2017-03-29 12:32 |
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Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
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1,729 |
by rmoretti Wed, 2017-03-29 12:37 |
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Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
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2,026 |
by ac.research Fri, 2017-03-31 07:36 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
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2,013 |
by lah435 Mon, 2017-04-03 19:50 |
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can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
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2,280 |
by rmoretti Fri, 2017-04-14 08:37 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
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3,379 |
by smlewis Tue, 2017-04-18 08:33 |
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Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
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2,611 |
by rmoretti Tue, 2017-04-18 13:49 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
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1,809 |
by rmoretti Fri, 2017-04-21 07:52 |
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Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
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2,224 |
by vmulligan Thu, 2017-04-27 16:41 |
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rosetta compile by MA » Wed, 2017-04-26 00:46 |
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1,892 |
by MA Thu, 2017-04-27 18:53 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
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1,897 |
by rmoretti Mon, 2017-05-15 09:03 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
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3,380 |
by rmoretti Wed, 2017-06-28 01:33 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
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1,605 |
by smlewis Wed, 2017-06-28 06:59 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
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3,214 |
by linucks Mon, 2017-07-03 09:50 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
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2,178 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
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2,641 |
by jcminerlanl Thu, 2017-07-06 09:22 |
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B1_SampleSegment1.sh from RosettaES tutorial crashes by ab » Tue, 2017-07-04 08:42 |
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7,930 |
by brandon.frenz Sat, 2017-07-08 13:49 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
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1,356 |
by jeliazkov Tue, 2017-07-18 09:51 |
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Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
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3,853 |
by SenyorDrew Mon, 2017-07-24 11:06 |
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How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
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3,819 |
by SenyorDrew Sat, 2017-07-29 09:59 |
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
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2,357 |
by rmoretti Thu, 2017-08-03 08:50 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
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4,079 |
by rmoretti Thu, 2017-08-03 09:01 |
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Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
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3,629 |
by matteoferla Sat, 2017-08-05 07:18 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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7,455 |
by rmoretti Mon, 2017-08-14 09:06 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
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3,631 |
by smlewis Wed, 2017-08-16 08:30 |
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Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
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1,949 |
by ac.research Fri, 2017-08-18 00:53 |
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Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
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6,236 |
by ac.research Fri, 2017-08-18 00:57 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
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1,515 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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1,282 |
by rmoretti Mon, 2017-08-21 09:55 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
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2,564 |
by rmoretti Mon, 2017-08-28 09:32 |
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What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
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7,100 |
by smlewis Tue, 2017-08-29 08:56 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
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3,904 |
by ac.research Mon, 2017-09-04 16:43 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
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1,457 |
by rmoretti Wed, 2017-09-06 08:47 |
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extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
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1,515 |
by rmoretti Fri, 2017-09-08 15:15 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
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4,524 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
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2,942 |
by ac.research Sun, 2017-09-24 11:25 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,217 |
by fmerino Mon, 2017-10-16 04:02 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
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2,847 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
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2,319 |
by rmoretti Mon, 2017-10-30 12:02 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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926 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
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1,745 |
by jadolfbr Wed, 2017-11-01 10:11 |
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Rosetta/PyRosetta on GPU by ac.research » Mon, 2017-11-06 05:18 |
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4,046 |
by rmoretti Mon, 2017-11-06 07:36 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
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3,747 |
by smlewis Wed, 2017-11-08 12:08 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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940 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
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2,746 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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1,312 |
by ac.research Sat, 2017-11-18 06:54 |
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MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
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2,902 |
by smlewis Sun, 2017-11-19 20:08 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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1,377 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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966 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
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3,220 |
by everyday847 Tue, 2017-11-28 13:07 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
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1,575 |
by rmoretti Sat, 2017-12-02 10:22 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
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1,892 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,094 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
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1,337 |
by Loki01 Wed, 2017-12-13 05:27 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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943 |
by bio_james Wed, 2017-12-13 09:13 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
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3,657 |
by Loki01 Thu, 2017-12-14 06:20 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
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3,100 |
by rmoretti Sat, 2017-12-16 12:19 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
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3,651 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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1,915 |
by aneamtu Mon, 2018-01-08 23:49 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
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1,703 |
by rmoretti Mon, 2018-01-15 14:35 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
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3,148 |
by rmoretti Mon, 2018-01-15 15:24 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
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3,548 |
by rmoretti Mon, 2018-01-15 15:34 |
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Histidine protonation by DmitriiN » Mon, 2016-09-26 13:15 |
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15,838 |
by rmoretti Mon, 2018-01-15 15:37 |
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changing the chain id by aneamtu » Tue, 2018-01-09 00:08 |
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4,045 |
by aneamtu Thu, 2018-01-18 00:56 |
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[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
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1,419 |
by rmoretti Tue, 2018-01-30 08:29 |
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Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
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1,935 |
by rmoretti Tue, 2018-01-30 09:08 |
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ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
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1,994 |
by rmoretti Wed, 2018-01-31 14:57 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
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2,232 |
by htorres Mon, 2018-02-05 06:53 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
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1,476 |
by rmoretti Mon, 2018-02-05 15:44 |
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Repeating sequence in Rosetta de novo protein folding by orionshih » Wed, 2018-02-07 20:52 |
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1,772 |
by sheehajh Thu, 2018-02-08 21:18 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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1,388 |
by rmoretti Mon, 2018-02-12 09:39 |
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log files by shadrinams » Fri, 2018-01-26 07:29 |
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5,828 |
by shadrinams Mon, 2018-02-12 11:47 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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1,264 |
by rmoretti Thu, 2018-02-22 09:29 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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3,515 |
by linucks Fri, 2018-02-23 08:08 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
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2,835 |
by matteoferla Mon, 2018-02-26 02:05 |
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RestrictToRepackingRLT and PreventRepackingRLT by coomteng@gmail.com » Mon, 2018-03-05 11:19 |
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2,077 |
by coomteng@gmail.com Tue, 2018-03-06 02:31 |
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Rosetta relax application for generating ensemble of structures. by abhi_pe_acharya » Mon, 2018-02-26 09:08 |
3 |
2,930 |
by ssrb Tue, 2018-03-06 14:15 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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3,360 |
by rmoretti Thu, 2018-03-08 07:46 |
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ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed by ahmadkhalifa » Wed, 2017-12-06 07:38 |
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7,363 |
by brandon.frenz Thu, 2018-03-08 09:28 |
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Rosetta matching error by purvi24 » Mon, 2018-03-12 02:38 |
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1,829 |
by smlewis Mon, 2018-03-12 09:57 |
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The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
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1,936 |
by rmoretti Sat, 2018-03-17 10:43 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
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1,350 |
by rmoretti Mon, 2018-03-19 09:08 |
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
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3,638 |
by rmoretti Mon, 2018-03-19 12:35 |
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Running a ReportFSC mover between two .mrc maps by ahmadkhalifa » Mon, 2018-03-12 07:52 |
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5,071 |
by brandon.frenz Tue, 2018-03-20 10:28 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
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3,823 |
by smlewis Wed, 2018-03-21 08:42 |
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build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
3 |
2,281 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
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Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
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2,155 |
by smlewis Wed, 2018-04-04 10:42 |
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Multiprocessing and running jobs on server using slurm by ahmadkhalifa » Mon, 2018-04-09 10:59 |
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3,745 |
by rmoretti Tue, 2018-04-10 16:00 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
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3,222 |
by smlewis Wed, 2018-04-11 11:45 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
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1,408 |
by jkleman Sat, 2018-04-14 10:55 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
1 |
1,745 |
by smlewis Mon, 2018-04-16 16:32 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
0 |
913 |
by obdulia Wed, 2018-04-18 00:45 |
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