You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views | Last post | |
---|---|---|---|---|
What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
6 |
7,198 |
by smlewis Mon, 2014-04-21 06:47 |
|
is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
2 |
2,855 |
by rmoretti Mon, 2014-04-21 06:47 |
|
ddG average energy by dave » Wed, 2013-04-03 03:36 |
1 |
2,502 |
by rmoretti Mon, 2014-04-21 06:47 |
|
ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
1 |
2,281 |
by smlewis Mon, 2014-04-21 06:47 |
|
kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
8 |
8,385 |
by smlewis Mon, 2014-04-21 06:47 |
|
-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
3 |
3,905 |
by tsjain Mon, 2014-04-21 06:47 |
|
create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
5,118 |
by smlewis Mon, 2014-04-21 06:47 |
|
Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
4 |
4,737 |
by Martin Floor Mon, 2014-04-21 06:47 |
|
jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,762 |
by ytao Mon, 2014-04-21 06:47 |
|
Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
3 |
3,617 |
by smlewis Mon, 2014-04-21 06:47 |
|
flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
9 |
11,964 |
by gsmurphy Mon, 2014-04-21 06:47 |
|
multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
4 |
4,533 |
by logandonaldson Mon, 2014-04-21 06:47 |
|
how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
3 |
15,104 |
by smlewis Mon, 2014-04-21 06:47 |
|
side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
8,784 |
by qlj Mon, 2014-04-21 06:47 |
|
Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 |
55 |
55,431 |
by bharat_46010 Mon, 2014-04-21 06:47 |
|
run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
1 |
2,133 |
by smlewis Mon, 2014-04-21 06:47 |
|
cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
5 |
7,165 |
by ritacc18 Mon, 2014-04-21 06:47 |
|
pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
10 |
8,857 |
by smlewis Mon, 2014-04-21 06:47 |
|
Can I use the relax mode application for removing clashes in a membrane protein homology model? by doranhen » Thu, 2012-12-20 05:45 |
2 |
3,008 |
by doranhen Mon, 2014-04-21 06:47 |
|
memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
8 |
9,916 |
by smlewis Mon, 2014-04-21 06:47 |
|
Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
3,813 |
by smlewis Mon, 2014-04-21 06:47 |
|
fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
2 |
3,598 |
by doranhen Mon, 2014-04-21 06:47 |
|
How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
13 |
11,913 |
by rmoretti Mon, 2014-04-21 06:47 |
|
fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
13 |
12,669 |
by sabine Mon, 2014-04-21 06:47 |
|
nr.fasta by silvia » Wed, 2013-01-23 10:08 |
5 |
10,620 |
by dgront Mon, 2014-04-21 06:47 |
|
Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
5 |
5,980 |
by doranhen Mon, 2014-04-21 06:47 |
|
membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
6 |
6,130 |
by tevang Mon, 2014-04-21 06:47 |
|
Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
2 |
3,081 |
by kalabharath Mon, 2014-04-21 06:47 |
|
Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
2 |
3,266 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
2 |
3,162 |
by petrikigor Mon, 2014-04-21 06:47 |
|
Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,577 |
by coxford Mon, 2014-04-21 06:47 |
|
Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
6,456 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
11 |
10,578 |
by rmoretti Mon, 2014-04-21 06:47 |
|
How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
3 |
3,280 |
by msun Mon, 2014-04-21 06:47 |
|
Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,997 |
by smlewis Mon, 2014-04-21 06:47 |
|
an old question by albumns » Sun, 2012-10-28 12:14 |
4 |
4,854 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
2 |
3,166 |
by khanhbinh Mon, 2014-04-21 06:47 |
|
match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
5 |
5,609 |
by rmoretti Mon, 2014-04-21 06:47 |
|
model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
1 |
2,926 |
by smlewis Mon, 2014-04-21 06:47 |
|
computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
6,237 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
6 |
6,888 |
by smlewis Mon, 2014-04-21 06:47 |
|
ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
2,322 |
by rmoretti Mon, 2014-04-21 06:47 |
|
AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
2,630 |
by rmoretti Mon, 2014-04-21 06:47 |
|
loop design by varma » Sun, 2012-11-04 21:25 |
2 |
3,998 |
by varma Mon, 2014-04-21 06:47 |
|
ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
2 |
3,068 |
by dave Mon, 2014-04-21 06:47 |
|
Can't make NCAA's and D-aminoacids work by jarek » Fri, 2012-10-26 09:10 |
26 |
24,654 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
4 |
4,731 |
by pardave Mon, 2014-04-21 06:47 |
|
Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
1 |
3,344 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
1 |
3,340 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Identical decoys by aroop » Tue, 2012-09-25 12:50 |
4 |
4,684 |
by smlewis Mon, 2014-04-21 06:47 |
|
Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
4,221 |
by xujc Mon, 2014-04-21 06:47 |
|
Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
5 |
6,589 |
by qlj Mon, 2014-04-21 06:47 |
|
enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
4,314 |
by bo Mon, 2014-04-21 06:47 |
|
Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
6,388 |
by smlewis Mon, 2014-04-21 06:47 |
|
Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
5 |
5,347 |
by glemmon Mon, 2014-04-21 06:47 |
|
Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
2 |
3,637 |
by rmoretti Mon, 2014-04-21 06:47 |
|
packstat in InterfaceAnalyzer by Anonymous » Mon, 2012-08-20 03:19 |
22 |
19,111 |
by Anonymous Mon, 2014-04-21 06:47 |
|
Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
7 |
6,879 |
by smlewis Mon, 2014-04-21 06:47 |
|
Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
13 |
10,779 |
by smlewis Mon, 2014-04-21 06:47 |
|
Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
4,465 |
by smlewis Mon, 2014-04-21 06:47 |
|
rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
4 |
4,738 |
by gw Mon, 2014-04-21 06:47 |
|
AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
9 |
9,551 |
by jamsmad Mon, 2014-04-21 06:47 |
|
header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
1 |
2,361 |
by smlewis Mon, 2014-04-21 06:47 |
|
fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
13 |
10,964 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
3,051 |
by Anonymous Mon, 2014-04-21 06:47 |
|
Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
3 |
3,214 |
by smlewis Mon, 2014-04-21 06:47 |
|
How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
2 |
3,111 |
by Anatol Mon, 2014-04-21 06:47 |
|
Steps to use D-amino acids by tevang » Mon, 2012-09-10 15:42 |
15 |
16,485 |
by tevang Mon, 2014-04-21 06:47 |
|
RNA Denovo RMSD data by eremma » Thu, 2012-08-02 01:40 |
31 |
26,884 |
by eremma Mon, 2014-04-21 06:47 |
|
The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
6 |
8,237 |
by Jacob-kong Mon, 2014-04-21 06:47 |
|
unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
4,473 |
by jiongzhang Mon, 2014-04-21 06:47 |
|
How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
1 |
3,235 |
by smlewis Mon, 2014-04-21 06:47 |
|
postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
4 |
4,237 |
by smlewis Mon, 2014-04-21 06:47 |
|
How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
1 |
2,476 |
by smlewis Mon, 2014-04-21 06:47 |
|
protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
5,927 |
by smlewis Mon, 2014-04-21 06:47 |
|
Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
1 |
2,912 |
by smlewis Mon, 2014-04-21 06:47 |
|
Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
5,382 |
by Jacob-kong Mon, 2014-04-21 06:47 |
|
optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
6 |
6,709 |
by smlewis Mon, 2014-04-21 06:47 |
|
Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
5,019 |
by rmoretti Mon, 2014-04-21 06:47 |
|
How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
2,494 |
by Anonymous Mon, 2014-04-21 06:47 |
|
Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
2 |
3,111 |
by Lindsay Mon, 2014-04-21 06:47 |
|
Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
1 |
3,042 |
by smlewis Mon, 2014-04-21 06:47 |
|
Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
3,588 |
by smlewis Mon, 2014-04-21 06:47 |
|
how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
3 |
4,192 |
by rmoretti Mon, 2014-04-21 06:47 |
|
prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
1 |
2,584 |
by smlewis Mon, 2014-04-21 06:47 |
|
Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
3,768 |
by scombs Mon, 2014-04-21 06:47 |
|
Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
5,619 |
by aroop Mon, 2014-04-21 06:47 |
|
how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
7 |
8,056 |
by Lindsay Mon, 2014-04-21 06:47 |
|
Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
9,380 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,957 |
by abiadak Mon, 2014-04-21 06:47 |
|
spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
3,996 |
by smlewis Mon, 2014-04-21 06:47 |
|
Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,541 |
by inder Mon, 2014-04-21 06:47 |
|
How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
1 |
3,244 |
by smlewis Mon, 2014-04-21 06:47 |
|
what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
10 |
9,218 |
by smlewis Mon, 2014-04-21 06:47 |
|
Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
1 |
2,777 |
by smlewis Mon, 2014-04-21 06:47 |
|
Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
6 |
5,732 |
by Anonymous Mon, 2014-04-21 06:47 |
|
Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
4 |
4,857 |
by smlewis Mon, 2014-04-21 06:47 |
|
Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
4,307 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
1 |
2,195 |
by frichter Mon, 2014-04-21 06:47 |
|
Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
9 |
9,504 |
by Lindsay Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.