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Rosetta 3 - General

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Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
3,325 by smlewis
Mon, 2014-04-21 06:47
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
2,510 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,017 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,115 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
4,341 by rmoretti
Mon, 2014-04-21 06:47
Hot topic problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1
by Marsia » Thu, 2010-07-22 22:49
18
12,686 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
3,394 by monica0569
Mon, 2014-04-21 06:47
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
3,447 by rmoretti
Mon, 2014-04-21 06:48
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
1,865 by decrSTL
Tue, 2019-08-27 10:24
Normal topic problem plotting results from docking_analyser with provided Rscript
by madammolecular » Mon, 2021-02-01 14:44
2
719 by amystevens
Thu, 2021-09-30 14:18
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,487 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Problem with 'AddEncounterConstraintMover'
by mb0261 » Tue, 2022-06-28 10:00
1
28 by rmoretti
Tue, 2022-06-28 11:06
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,127 by rmoretti
Fri, 2015-01-09 10:59
Normal topic Problem with clustering 1000 centroid pdbs
by doranhen » Sat, 2012-04-28 10:34
6
5,577 by doranhen
Mon, 2014-04-21 06:47
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
4,679 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with match on enzdes
by ahuls1 » Thu, 2021-07-29 13:21
1
580 by ahuls1
Thu, 2021-07-29 13:23
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
1,992 by rmoretti
Thu, 2017-08-03 08:50
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
1,214 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01
6
5,078 by jurkm
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
2,174 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
1,891 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
3,869 by lzx32
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,075 by rmoretti
Mon, 2017-08-21 09:55
Normal topic Problem with undetected lower and upper terminus variants for new polymer
by Martin Floor » Sat, 2022-06-11 06:51
4
95 by Martin Floor
Thu, 2022-06-30 10:05
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
2,439 by molon
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,565 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,714 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
2,597 by jklett
Mon, 2014-04-21 06:47
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
5,228 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
9
6,158 by ac.research
Mon, 2018-05-14 10:20
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,046 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
2,750 by helenah
Tue, 2020-11-03 04:33
Normal topic Problems with disulphide bonds during KIC
by Loki01 » Tue, 2017-11-28 03:11
5
3,061 by Loki01
Thu, 2017-12-14 06:20
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
931 by connyyu
Thu, 2019-04-18 03:26
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30
3
2,786 by rmoretti
Wed, 2017-06-28 01:33
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
1,523 by rmoretti
Tue, 2016-07-12 08:43
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55
26
23,106 by omirus
Mon, 2014-04-21 06:48
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
3,707 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,002 by vmulligan
Sat, 2020-04-11 17:40
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
1,783 by rmoretti
Fri, 2018-08-03 08:42
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
0
50 by guowuchen
Thu, 2022-06-23 04:43
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
4,658 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
765 by rmoretti
Tue, 2021-02-09 12:25
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41
33
26,948 by jyy
Wed, 2019-02-20 00:30
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
1,614 by ac.research
Fri, 2017-08-18 00:53
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
48,669 by rmoretti
Fri, 2015-07-03 13:29
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
3,262 by rmoretti
Mon, 2014-04-21 06:48
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
12,028 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,170 by nannemdp
Tue, 2020-05-26 06:33
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
2,283 by smlewis
Mon, 2018-12-31 08:58
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
0
92 by Hyun
Tue, 2022-03-29 19:53
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
4,829 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
1,238 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,108 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
2,186 by mpacella
Mon, 2014-04-21 06:47
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
2,860 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
4,731 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
4,204 by weallen
Mon, 2014-04-21 06:47
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
2,364 by phanvy
Sun, 2014-06-22 23:29
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
1,191 by exchhattu
Mon, 2014-04-21 06:47
Normal topic pyrosetta.rosetta.core.pose.rna
by chenjief » Tue, 2021-11-23 07:03
3
654 by matteoferla
Mon, 2022-01-10 06:44
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,751 by albumns
Mon, 2014-04-21 06:47
Normal topic Quesition about Relax Mode
by crysta11 » Wed, 2009-10-21 09:57
3
2,871 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
1,421 by orionshih
Tue, 2018-05-01 21:16
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
1,150 by rmoretti
Wed, 2018-08-01 16:04
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
2,805 by smlewis
Mon, 2016-08-22 10:28
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,801 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
0
94 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
2,729 by phanvy
Wed, 2014-07-02 23:32
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
2,711 by rmoretti
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,776 by rmoretti
Mon, 2014-06-09 10:05
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
1,880 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
5,205 by rmoretti
Thu, 2016-02-04 09:29
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
5,322 by qlj
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
3,812 by smlewis
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
4,319 by zeynep
Mon, 2014-04-21 06:47
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
573 by LTJ
Mon, 2020-07-06 14:13
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
4,764 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
3,828 by dgront
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,066 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,029 by smlewis
Thu, 2018-06-28 13:34
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
474 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
3,389 by ctaylor
Mon, 2014-04-21 06:47
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
2,206 by SergeyP
Sun, 2015-12-20 01:44
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
2,652 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
3,741 by pardave
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
2,151 by Lati
Tue, 2016-01-12 13:28
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,653 by Lati
Fri, 2015-11-20 03:32
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,809 by rmoretti
Mon, 2014-12-15 02:37
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
2,838 by smlewis
Mon, 2014-04-21 06:47
Hot topic RE: Loop Modeling and Beta-strand design
by bharat_46010 » Sun, 2012-02-12 16:34
19
13,373 by smlewis
Mon, 2014-04-21 06:47
Hot topic Re: Multigraft
by bharat_46010 » Wed, 2011-12-07 17:24
35
25,909 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
7,090 by rmoretti
Mon, 2015-06-01 15:27
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47
55
43,986 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
1,995 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
1,676 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
5,244 by rmoretti
Mon, 2014-04-21 06:47
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
0
816 by hajar
Wed, 2020-06-10 11:17
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
1,606 by smlewis
Mon, 2014-04-21 06:47
Normal topic Recommendations for CoupledMoves enzyme redesign
by dgm3 » Thu, 2021-03-04 10:53
1
728 by aloshbau
Tue, 2021-03-09 02:47
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