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Rosetta 3 - General

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Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
3,124 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
2,009 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
1,896 by smlewis
Mon, 2014-04-21 06:47
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
720 by nannemdp
Sun, 2021-06-06 09:26
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
2,064 by DmitriiN
Wed, 2016-06-01 15:46
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
1,749 by everyday847
Thu, 2021-04-01 11:59
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,218 by rmoretti
Mon, 2018-10-08 11:20
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
946 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
1,778 by rmoretti
Mon, 2016-11-14 15:12
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
1,183 by matteoferla
Tue, 2020-06-23 10:58
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
3,637 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
2,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb files in Rosetta format
by zhisheng » Mon, 2011-10-31 08:52
6
6,443 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
3,736 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
1,861 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
1
238 by rmoretti
Tue, 2022-09-06 08:13
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
3,703 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,540 by rmoretti
Thu, 2015-08-06 09:21
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
1,838 by smlewis
Wed, 2019-12-04 13:07
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,965 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
2,334 by matteoferla
Thu, 2018-10-04 01:30
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
1,576 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
5,005 by rmoretti
Mon, 2014-04-21 06:47
Normal topic PIPER-FlexPepDock protocol file apply_ftresult.py missing
by diasmarieli » Thu, 2021-11-04 06:33
2
1,005 by diasmarieli
Fri, 2021-11-26 05:11
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,589 by ssrb
Tue, 2016-07-12 10:02
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,773 by nawsad
Wed, 2014-06-25 13:26
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,833 by rmoretti
Tue, 2014-11-04 10:35
Normal topic pmut and scoring
by ldlamini » Tue, 2021-09-14 00:46
3
1,296 by matteoferla
Mon, 2021-09-20 06:05
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
7,584 by smlewis
Mon, 2014-04-21 06:47
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
0
233 by Karthik
Wed, 2022-07-13 23:45
Normal topic pose.energies().total_enegies().show_nonzero() changes after packer is applied
by Liviu Copoiu » Mon, 2022-11-07 16:51
2
272 by Liviu Copoiu
Tue, 2022-11-08 10:43
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
2,163 by Anonymous
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,487 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,262 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,439 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
2,570 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
2,361 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
5,924 by rmoretti
Mon, 2014-11-03 16:39
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
3,672 by smlewis
Mon, 2014-04-21 06:47
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
2,790 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,234 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
0
258 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,301 by smlewis
Mon, 2014-04-21 06:47
Normal topic Prepacking crashing using metalloprotein
by mb0261 » Tue, 2022-12-06 10:16
0
254 by mb0261
Tue, 2022-12-06 10:16
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
4,681 by rmoretti
Mon, 2014-04-21 06:47
Hot topic problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1
by Marsia » Thu, 2010-07-22 22:49
18
13,758 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
3,667 by monica0569
Mon, 2014-04-21 06:47
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
3,684 by rmoretti
Mon, 2014-04-21 06:48
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
2,217 by decrSTL
Tue, 2019-08-27 10:24
Normal topic problem plotting results from docking_analyser with provided Rscript
by madammolecular » Mon, 2021-02-01 14:44
2
1,093 by amystevens
Thu, 2021-09-30 14:18
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,612 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Problem with 'AddEncounterConstraintMover'
by mb0261 » Tue, 2022-06-28 10:00
1
356 by rmoretti
Tue, 2022-06-28 11:06
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,356 by rmoretti
Fri, 2015-01-09 10:59
Normal topic Problem with clustering 1000 centroid pdbs
by doranhen » Sat, 2012-04-28 10:34
6
5,944 by doranhen
Mon, 2014-04-21 06:47
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
5,129 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with match on enzdes
by ahuls1 » Thu, 2021-07-29 13:21
1
803 by ahuls1
Thu, 2021-07-29 13:23
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
2,290 by rmoretti
Thu, 2017-08-03 08:50
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
1,727 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01
6
5,482 by jurkm
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
2,531 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
2,050 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
4,178 by lzx32
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,245 by rmoretti
Mon, 2017-08-21 09:55
Normal topic Problem with undetected lower and upper terminus variants for new polymer
by Martin Floor » Sat, 2022-06-11 06:51
5
874 by matteoferla
Fri, 2022-07-01 13:49
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
2,679 by molon
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,725 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,900 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
2,843 by jklett
Mon, 2014-04-21 06:47
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
5,541 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
9
7,165 by ac.research
Mon, 2018-05-14 10:20
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,228 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
3,605 by helenah
Tue, 2020-11-03 04:33
Normal topic Problems with disulphide bonds during KIC
by Loki01 » Tue, 2017-11-28 03:11
5
3,556 by Loki01
Thu, 2017-12-14 06:20
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
0
194 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
1,151 by connyyu
Thu, 2019-04-18 03:26
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30
3
3,280 by rmoretti
Wed, 2017-06-28 01:33
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
1,748 by rmoretti
Tue, 2016-07-12 08:43
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55
26
25,141 by omirus
Mon, 2014-04-21 06:48
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
4,331 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,241 by vmulligan
Sat, 2020-04-11 17:40
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
2,115 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
0
179 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
0
306 by guowuchen
Thu, 2022-06-23 04:43
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
5,085 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
1,000 by rmoretti
Tue, 2021-02-09 12:25
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41
33
29,575 by jyy
Wed, 2019-02-20 00:30
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
1,897 by ac.research
Fri, 2017-08-18 00:53
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
53,361 by rmoretti
Fri, 2015-07-03 13:29
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
3,604 by rmoretti
Mon, 2014-04-21 06:48
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
13,354 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,453 by nannemdp
Tue, 2020-05-26 06:33
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
2,695 by smlewis
Mon, 2018-12-31 08:58
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
0
268 by Hyun
Tue, 2022-03-29 19:53
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
5,260 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
1,495 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,307 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
2,372 by mpacella
Mon, 2014-04-21 06:47
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
3,547 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
5,207 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
4,660 by weallen
Mon, 2014-04-21 06:47
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Hot topic with new posts
Hot topic without new posts
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