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Rosetta 3 - General

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Normal topic No values for total score while running Rosetta score file.
by Shweata Maurya » Wed, 2023-02-01 02:05
4
1,102 by Shweata Maurya
Wed, 2023-02-08 03:19
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
3,552 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
2,075 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
2,240 by smlewis
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
4,348 by Victor
Fri, 2014-01-31 10:41
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
5,378 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
10,560 by dgront
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
2,156 by fred
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,775 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
721 by CameronJA
Mon, 2021-06-14 16:12
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
3,434 by scombs
Mon, 2014-04-21 06:47
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
716 by Antonia
Wed, 2021-06-16 12:30
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
0
492 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Only 430 models are generated for membrane prediction
by justin » Wed, 2010-01-06 00:04
3
3,587 by smlewis
Mon, 2014-04-21 06:47
Normal topic opencl support programs
by x_wuxi » Mon, 2021-04-12 18:17
1
1,298 by rmoretti
Tue, 2021-04-13 06:42
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
2,172 by rmoretti
Mon, 2014-04-21 06:48
Normal topic optH flag makes hydrogen bond energy scores worse...
by tsjain » Fri, 2012-07-13 14:04
6
6,666 by smlewis
Mon, 2014-04-21 06:47
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
2,180 by rmoretti
Mon, 2017-05-15 09:03
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
852 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic Output and Input Tutorial
by jgustat » Fri, 2022-07-01 13:07
2
989 by jgustat
Fri, 2022-07-01 13:26
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
2,246 by rmoretti
Mon, 2015-05-25 11:07
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
4,892 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
6,647 by rmoretti
Mon, 2014-04-21 06:48
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,494 by smlewis
Mon, 2014-04-21 06:47
Hot topic packstat in InterfaceAnalyzer
by Anonymous » Mon, 2012-08-20 03:19
22
18,928 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,678 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
3,508 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
2,021 by nawsad
Fri, 2014-06-20 03:00
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
3,587 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
2,290 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
2,197 by smlewis
Mon, 2014-04-21 06:47
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
1,113 by nannemdp
Sun, 2021-06-06 09:26
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
2,473 by DmitriiN
Wed, 2016-06-01 15:46
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
2,555 by everyday847
Thu, 2021-04-01 11:59
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,535 by rmoretti
Mon, 2018-10-08 11:20
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
1,448 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
2,073 by rmoretti
Mon, 2016-11-14 15:12
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
1,647 by matteoferla
Tue, 2020-06-23 10:58
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
4,098 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
2,465 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb files in Rosetta format
by zhisheng » Mon, 2011-10-31 08:52
6
7,199 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
4,239 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
2,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
1
796 by rmoretti
Tue, 2022-09-06 08:13
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
4,209 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,968 by rmoretti
Thu, 2015-08-06 09:21
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
2,511 by smlewis
Wed, 2019-12-04 13:07
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
2,260 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
2,913 by matteoferla
Thu, 2018-10-04 01:30
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
2,000 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
5,598 by rmoretti
Mon, 2014-04-21 06:47
Normal topic PIPER-FlexPepDock protocol file apply_ftresult.py missing
by diasmarieli » Thu, 2021-11-04 06:33
2
1,582 by diasmarieli
Fri, 2021-11-26 05:11
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,916 by ssrb
Tue, 2016-07-12 10:02
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
2,058 by nawsad
Wed, 2014-06-25 13:26
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
2,123 by rmoretti
Tue, 2014-11-04 10:35
Normal topic pmut and scoring
by ldlamini » Tue, 2021-09-14 00:46
3
2,062 by matteoferla
Mon, 2021-09-20 06:05
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
8,792 by smlewis
Mon, 2014-04-21 06:47
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
0
515 by Karthik
Wed, 2022-07-13 23:45
Normal topic pose.energies().total_enegies().show_nonzero() changes after packer is applied
by Liviu Copoiu » Mon, 2022-11-07 16:51
2
874 by Liviu Copoiu
Tue, 2022-11-08 10:43
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
2,412 by Anonymous
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,611 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
2,949 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,703 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,448 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
2,765 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
6,458 by rmoretti
Mon, 2014-11-03 16:39
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
4,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
3,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,597 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predicting conformations of mutated residues
by Delfosse57 » Tue, 2023-08-22 12:26
1
369 by rmoretti
Wed, 2023-08-23 08:26
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
0
544 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,567 by smlewis
Mon, 2014-04-21 06:47
Normal topic Prepacking crashing using metalloprotein
by mb0261 » Tue, 2022-12-06 10:16
0
558 by mb0261
Tue, 2022-12-06 10:16
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
5,282 by rmoretti
Mon, 2014-04-21 06:47
Hot topic problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1
by Marsia » Thu, 2010-07-22 22:49
18
15,769 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
4,108 by monica0569
Mon, 2014-04-21 06:47
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
4,021 by rmoretti
Mon, 2014-04-21 06:48
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
2,885 by decrSTL
Tue, 2019-08-27 10:24
Normal topic problem plotting results from docking_analyser with provided Rscript
by madammolecular » Mon, 2021-02-01 14:44
2
1,553 by amystevens
Thu, 2021-09-30 14:18
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,811 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Problem with 'AddEncounterConstraintMover'
by mb0261 » Tue, 2022-06-28 10:00
1
794 by rmoretti
Tue, 2022-06-28 11:06
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,743 by rmoretti
Fri, 2015-01-09 10:59
Normal topic Problem with clustering 1000 centroid pdbs
by doranhen » Sat, 2012-04-28 10:34
6
6,567 by doranhen
Mon, 2014-04-21 06:47
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
5,737 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with match on enzdes
by ahuls1 » Thu, 2021-07-29 13:21
1
1,185 by ahuls1
Thu, 2021-07-29 13:23
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
2,799 by rmoretti
Thu, 2017-08-03 08:50
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
2,907 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01
6
6,194 by jurkm
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
3,123 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
2,320 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with sugar parameters
by Martin Floor » Sat, 2023-10-07 10:17
0
432 by Martin Floor
Sat, 2023-10-07 10:17
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
4,666 by lzx32
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,554 by rmoretti
Mon, 2017-08-21 09:55
Normal topic Problem with undetected lower and upper terminus variants for new polymer
by Martin Floor » Sat, 2022-06-11 06:51
5
2,004 by matteoferla
Fri, 2022-07-01 13:49
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
3,081 by molon
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
2,007 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
2,171 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
3,269 by jklett
Mon, 2014-04-21 06:47
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
6,111 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
9
8,830 by ac.research
Mon, 2018-05-14 10:20
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