You are here

Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Hbond tripped
by alejandro » Mon, 2011-11-21 04:17
3
3,025 by alejandro
Mon, 2014-04-21 06:47
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
3,025 by harshkhare
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,028 by rmoretti
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,031 by jarek
Mon, 2014-04-21 06:48
Normal topic Rosetta CM - Ignore Sporadic Errors
by Swillard » Wed, 2018-06-13 05:47
6
3,031 by rmoretti
Mon, 2018-11-12 14:29
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
3,033 by cannond
Wed, 2017-03-01 08:05
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
3,034 by varma
Mon, 2014-04-21 06:47
Normal topic build parallel version of Rosetta
by atfrank » Tue, 2009-10-06 22:33
2
3,038 by smlewis
Mon, 2014-04-21 06:47
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43
4
3,049 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Information about “membrane_highres_Menv_smooth.wts”
by Groros » Sun, 2011-10-02 03:59
3
3,064 by smlewis
Mon, 2014-04-21 06:47
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
3,076 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
3,077 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rigid Body & Flexible Minimization
by Hanieh » Thu, 2014-02-06 12:37
2
3,078 by Hanieh
Fri, 2014-02-28 12:43
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
3,080 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
3,092 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
3,094 by rmoretti
Tue, 2016-07-12 08:18
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
3,107 by freedman
Mon, 2017-03-06 13:24
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
3,120 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
3,128 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
3,134 by msardejani
Sun, 2016-08-07 17:49
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
3,138 by rmoretti
Mon, 2017-11-06 07:36
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
3,144 by zlni
Mon, 2014-04-21 06:47
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
3,148 by salvatta
Mon, 2018-09-10 10:04
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
3,150 by rmoretti
Mon, 2014-04-21 06:48
Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05
3
3,151 by franfdez
Mon, 2014-04-21 06:47
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
3,154 by smlewis
Mon, 2014-04-21 06:47
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15
3
3,155 by smlewis
Mon, 2014-04-21 06:47
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
3,157 by Apiwat
Thu, 2014-04-17 09:56
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
3,158 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold tree error
by mansi » Tue, 2010-05-18 07:43
2
3,163 by mansi
Mon, 2014-04-21 06:47
Normal topic Error Atom_::dihedral_between_bonded_children
by abiadak » Mon, 2012-07-30 06:34
2
3,180 by abiadak
Mon, 2014-04-21 06:47
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
3,187 by smlewis
Thu, 2016-04-21 16:00
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
3,187 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
3,187 by smlewis
Mon, 2014-04-21 06:47
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
3,187 by rmoretti
Mon, 2018-08-20 11:45
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
3,193 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
3,197 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
3,205 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
3,218 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
3,222 by rmoretti
Tue, 2018-04-10 16:00
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19
2
3,230 by rmoretti
Mon, 2014-04-21 06:47
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
3,233 by aneamtu
Thu, 2018-01-18 00:56
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
3,253 by ac.research
Mon, 2017-09-04 16:43
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
3,272 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
3,273 by MRH
Mon, 2014-04-21 06:48
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
3,274 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic how to identify selected interface residues
by vijayaraj81 » Mon, 2014-03-31 01:40
3
3,283 by rmoretti
Tue, 2014-04-01 08:12
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
3,284 by Victor
Fri, 2014-01-31 10:41
Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01
2
3,288 by rmoretti
Mon, 2014-04-21 06:47
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
3,303 by matteoferla
Sat, 2020-09-12 03:02
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
3,306 by rmoretti
Mon, 2015-03-30 16:58
Normal topic using defined WATERS in PACKING
by ast » Wed, 2012-01-11 09:11
4
3,313 by smlewis
Mon, 2014-04-21 06:47
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55
4
3,327 by pardave
Mon, 2014-04-21 06:47
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
3,328 by japgar
Mon, 2014-04-21 06:47
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
3,334 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
3,337 by monica0569
Mon, 2014-04-21 06:47
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
3,339 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
3,340 by smlewis
Mon, 2014-04-21 06:47
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
3,352 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,354 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Biopython error in mac os x
by vinodh » Tue, 2012-06-12 12:23
3
3,357 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
3,362 by cneale
Fri, 2014-03-21 18:13
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
3,363 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic enzdes error
by bo » Tue, 2012-08-21 09:12
4
3,375 by bo
Mon, 2014-04-21 06:47
Normal topic how to use rosettadesign to do mutations on protein structure
by lqzhang » Thu, 2010-03-04 07:43
3
3,383 by vanita
Mon, 2014-04-21 06:47
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
3,388 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
3,389 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
3,392 by rmoretti
Wed, 2015-01-21 10:05
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
3,393 by rmoretti
Thu, 2017-08-03 09:01
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
3,403 by rmoretti
Mon, 2015-02-09 11:21
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
3,407 by jwillis
Sat, 2015-02-07 20:40
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
3,407 by rmoretti
Fri, 2018-08-24 11:59
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
3,408 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
3,411 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Does Rosetta have homology modeling protocol?
by SunH » Thu, 2010-11-04 07:36
3
3,419 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
3,420 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
8
3,421 by ac.research
Mon, 2020-02-10 08:19
Normal topic how to output a structure when scoring it?
by tianbu » Tue, 2012-07-31 09:38
3
3,423 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta dock parallel
by mahajanr » Tue, 2010-06-01 16:04
3
3,426 by smlewis
Mon, 2014-04-21 06:47
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
3,428 by rmoretti
Mon, 2014-04-21 06:48
Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07
4
3,430 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
3,443 by smlewis
Mon, 2014-04-21 06:47
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
3,456 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00
4
3,463 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18
3
3,464 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
3,475 by saxen
Mon, 2016-04-25 10:38
Normal topic core.scoring.rms_util: WARNING: CA_rmsd out of range...
by mdyini » Sat, 2012-02-25 16:14
4
3,477 by mdyini
Mon, 2014-04-21 06:47
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
3,485 by zaldini
Fri, 2015-01-02 05:38
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
3,488 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
3,489 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
3,495 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
3,502 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
3,502 by zaldini
Wed, 2015-01-07 20:35
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
3,507 by einew
Mon, 2014-04-21 06:47
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
3,509 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
3,519 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
3,526 by smlewis
Wed, 2016-07-13 23:41
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44
4
3,526 by justin
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
3,530 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
3,533 by lanselibai
Tue, 2014-12-16 10:48
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General