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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
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3,066 |
by rmoretti Mon, 2014-04-21 06:47 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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3,067 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaDesign Server, reproducing optimized interface conformation by AlexanderMetz » Thu, 2012-02-09 10:41 |
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3,068 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
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3,069 |
by jos Mon, 2014-04-21 06:47 |
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Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
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3,079 |
by rmoretti Thu, 2015-09-17 12:42 |
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Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
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3,084 |
by smlewis Mon, 2014-04-21 06:47 |
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
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3,092 |
by cossio Wed, 2014-12-03 14:51 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
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3,093 |
by smlewis Fri, 2016-07-22 07:31 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
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3,098 |
by smlewis Mon, 2014-04-21 06:47 |
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NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
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3,105 |
by mpiuzzi Mon, 2014-04-21 06:47 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
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3,110 |
by everyday847 Tue, 2017-11-28 13:07 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
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3,120 |
by linucks Mon, 2017-07-03 09:50 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
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3,126 |
by smlewis Wed, 2018-04-11 11:45 |
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Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
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3,127 |
by smlewis Mon, 2014-04-21 06:47 |
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Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
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3,132 |
by smlewis Mon, 2016-08-22 10:28 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
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3,142 |
by smlewis Tue, 2018-06-12 10:54 |
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How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
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3,146 |
by rmoretti Wed, 2014-12-03 18:52 |
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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
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3,146 |
by rmoretti Mon, 2014-04-21 06:47 |
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ERROR: PDB reader is ignoring atom by phanvy » Wed, 2014-04-16 17:59 |
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3,148 |
by phanvy Mon, 2014-04-21 03:58 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
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3,151 |
by smlewis Mon, 2014-04-21 06:47 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
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3,151 |
by Awagner7 Tue, 2020-04-28 10:51 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
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3,157 |
by szypanther Mon, 2014-05-26 22:03 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
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3,159 |
by doranhen Mon, 2014-04-21 06:47 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
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3,159 |
by einew Mon, 2014-04-21 06:47 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
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3,176 |
by smlewis Mon, 2014-04-21 06:47 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
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3,176 |
by inder Mon, 2014-04-21 06:47 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
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3,177 |
by rmoretti Mon, 2014-04-21 06:48 |
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ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
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3,181 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
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3,186 |
by rmoretti Mon, 2014-04-21 06:47 |
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Pairwise decomposable terms in the Rosetta energy function by pgainza » Wed, 2011-08-03 12:26 |
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3,195 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
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3,200 |
by smlewis Mon, 2014-04-21 06:47 |
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backrub score different from calculated score by attesor » Wed, 2014-04-09 07:34 |
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3,200 |
by rmoretti Thu, 2014-04-10 07:38 |
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Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
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3,203 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
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3,209 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
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3,215 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
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3,216 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta numbering with missing occupancies by ShaneOConnor » Fri, 2011-10-07 16:18 |
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3,218 |
by ShaneOConnor Mon, 2014-04-21 06:47 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
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3,228 |
by alejandro Mon, 2014-04-21 06:47 |
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change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
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3,228 |
by SergeyP Thu, 2016-02-04 00:07 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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3,238 |
by jadolfbr Mon, 2019-01-28 08:46 |
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Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
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3,241 |
by IAndre Mon, 2014-04-21 06:47 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
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3,244 |
by rmoretti Mon, 2016-11-14 14:21 |
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Fix missing backbone residues by Matthys » Mon, 2010-05-03 09:03 |
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3,250 |
by Matthys Mon, 2014-04-21 06:47 |
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homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
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3,252 |
by biofisikx Mon, 2014-04-21 06:47 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
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3,255 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
3,255 |
by rmoretti Mon, 2014-04-21 06:48 |
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symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
1 |
3,264 |
by rmoretti Mon, 2014-04-21 06:47 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
5 |
3,266 |
by rmoretti Thu, 2018-03-08 07:46 |
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secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
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3,273 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
3 |
3,283 |
by rmoretti Wed, 2017-06-28 01:33 |
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The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
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3,290 |
by jrcf Fri, 2015-10-16 10:57 |
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RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
3 |
3,295 |
by smlewis Mon, 2014-04-21 06:47 |
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Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
2 |
3,301 |
by smlewis Mon, 2014-04-21 06:47 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
3 |
3,310 |
by frits Mon, 2014-04-21 06:48 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
3 |
3,312 |
by rmoretti Wed, 2015-12-16 11:22 |
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could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
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3,315 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
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3,318 |
by rmoretti Thu, 2015-04-30 16:09 |
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Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
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3,318 |
by gipsonb Mon, 2014-04-21 06:47 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
3 |
3,319 |
by alejandro Mon, 2014-04-21 06:47 |
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Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
4 |
3,319 |
by zharmad Mon, 2014-04-21 06:47 |
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Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
3,320 |
by smlewis Mon, 2014-04-21 06:47 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
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3,321 |
by Jacky010 Tue, 2019-05-14 01:24 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
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3,322 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
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3,327 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
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3,328 |
by smlewis Tue, 2017-04-18 08:33 |
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ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
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3,329 |
by harshkhare Mon, 2014-04-21 06:47 |
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Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
4 |
3,333 |
by smlewis Wed, 2016-03-30 09:52 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
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3,336 |
by attesor Thu, 2015-10-22 03:42 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,340 |
by jarek Mon, 2014-04-21 06:48 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
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3,341 |
by eunwook Mon, 2014-04-21 06:47 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
3 |
3,352 |
by smlewis Mon, 2014-04-21 06:47 |
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build parallel version of Rosetta by atfrank » Tue, 2009-10-06 22:33 |
2 |
3,354 |
by smlewis Mon, 2014-04-21 06:47 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
4 |
3,368 |
by zhiguang Tue, 2016-11-15 12:27 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
3 |
3,371 |
by tsjain Mon, 2014-04-21 06:47 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
4 |
3,374 |
by linucks Fri, 2018-02-23 08:08 |
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RNA Parameter File by hdavis9 » Tue, 2010-07-06 11:36 |
4 |
3,401 |
by smlewis Mon, 2014-04-21 06:47 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
2 |
3,403 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
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3,404 |
by rmoretti Mon, 2014-04-21 06:48 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
2 |
3,407 |
by Robert Evans Mon, 2014-04-21 06:48 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
1 |
3,411 |
by smlewis Mon, 2014-04-21 06:47 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
3 |
3,441 |
by rmoretti Mon, 2018-01-15 15:34 |
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Rigid Body & Flexible Minimization by Hanieh » Thu, 2014-02-06 12:37 |
2 |
3,464 |
by Hanieh Fri, 2014-02-28 12:43 |
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manually changing fixbb residue ref energies by jtmacd » Wed, 2009-11-25 08:43 |
4 |
3,466 |
by jtmacd Mon, 2014-04-21 06:47 |
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loop design by varma » Sun, 2012-11-04 21:25 |
2 |
3,467 |
by varma Mon, 2014-04-21 06:47 |
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Fold tree error by mansi » Tue, 2010-05-18 07:43 |
2 |
3,477 |
by mansi Mon, 2014-04-21 06:47 |
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loop modeling by isengupta13 » Wed, 2011-06-01 15:00 |
3 |
3,480 |
by smlewis Mon, 2014-04-21 06:47 |
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NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
3 |
3,483 |
by franfdez Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
3,489 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
4 |
3,494 |
by cannond Wed, 2017-03-01 08:05 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,506 |
by abiadak Mon, 2014-04-21 06:47 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
2 |
3,519 |
by rmoretti Tue, 2016-07-12 08:18 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
3,527 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
5 |
3,536 |
by smlewis Wed, 2017-08-16 08:30 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,539 |
by rmoretti Mon, 2014-04-21 06:47 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
2 |
3,542 |
by JuliusSu Fri, 2014-08-08 02:07 |
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Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
3 |
3,543 |
by matteoferla Sat, 2017-08-05 07:18 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
5 |
3,552 |
by jadolfbr Tue, 2019-04-16 09:15 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
5 |
3,555 |
by smlewis Tue, 2018-07-03 11:22 |
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Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
2 |
3,558 |
by jcsaborio Mon, 2014-04-21 06:47 |
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
3 |
3,560 |
by rmoretti Mon, 2018-03-19 12:35 |
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