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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
3,401 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
3,406 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
3,408 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
3,413 by renedominik
Sat, 2018-07-07 03:03
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
3,422 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to use backrub in rosetta3.1
by lqzhang » Mon, 2010-01-11 14:43
3
3,434 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
3,445 by rmoretti
Wed, 2019-04-03 09:31
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
3,451 by smlewis
Fri, 2016-07-29 07:43
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
3,452 by smlewis
Mon, 2018-12-31 08:58
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26
2
3,454 by jos
Mon, 2014-04-21 06:47
Normal topic Rosetta Design Stalling
by Jhreed » Sun, 2016-03-06 14:38
3
3,457 by rmoretti
Mon, 2016-03-07 14:20
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
3,459 by matteoferla
Mon, 2018-02-26 02:05
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
3,467 by ac.research
Sat, 2019-08-03 08:12
Normal topic Installing Rosetta Abinitio make_fragments.pl
by ctaylor » Thu, 2009-09-17 09:20
2
3,469 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
3,478 by jrcf
Fri, 2016-02-12 16:41
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
3,478 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
3,481 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
3,487 by smlewis
Sun, 2017-11-19 20:08
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
3,490 by rmoretti
Mon, 2015-05-25 11:00
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
3,491 by scombs
Mon, 2014-04-21 06:47
Normal topic Rosetta remodel on intel Xeon Phi
by pablogalazdavison » Wed, 2016-09-14 15:35
3
3,491 by pablogalazdavison
Thu, 2016-09-15 16:36
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
3,492 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
3,496 by aaxx
Wed, 2019-11-06 01:44
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
3,511 by ela
Thu, 2018-08-09 08:04
Normal topic How to use Rosetta 3.1 to model the structure of an antibody?
by sylvia » Mon, 2009-10-26 14:06
2
3,512 by vanita
Mon, 2014-04-21 06:47
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
3,520 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio Video
by ac.research » Tue, 2017-09-12 04:00
3
3,525 by ac.research
Sun, 2017-09-24 11:25
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
3,525 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18
1
3,528 by rmoretti
Mon, 2014-04-21 06:47
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
3,531 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
3,532 by rmoretti
Tue, 2014-06-03 11:45
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
3,534 by ctaylor
Mon, 2014-04-21 06:47
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
3,535 by rmoretti
Wed, 2014-12-03 18:52
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
3,542 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
3,543 by rmoretti
Fri, 2018-08-03 11:39
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
3,545 by ytao
Mon, 2014-04-21 06:48
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
3,545 by rmoretti
Thu, 2018-06-28 14:09
Normal topic # decoys of silent
by fred » Wed, 2014-04-02 06:00
3
3,552 by fred
Fri, 2014-04-04 11:34
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
3,559 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
3,566 by inder
Mon, 2014-04-21 06:47
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
3,569 by smlewis
Mon, 2014-04-21 06:47
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
3,575 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
3,579 by rmoretti
Mon, 2014-04-21 06:47
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
3,582 by rmoretti
Sun, 2015-07-05 14:28
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
3,585 by smlewis
Fri, 2016-07-22 07:31
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
3,588 by smlewis
Mon, 2014-04-21 06:47
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
3,595 by rmoretti
Mon, 2014-09-29 13:45
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,595 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
3,597 by phanvy
Wed, 2014-07-02 23:32
Normal topic interpreting score values in silent output file after running abinitiorelax
by burkheadlab » Wed, 2011-03-09 15:42
3
3,600 by smlewis
Mon, 2014-04-21 06:47
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
3,601 by rmoretti
Mon, 2014-04-21 06:48
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
3,601 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
3,606 by rmoretti
Thu, 2015-09-17 12:42
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
3,613 by smlewis
Mon, 2014-04-21 06:47
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
3,617 by smlewis
Mon, 2014-04-21 06:47
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
3,617 by smlewis
Mon, 2014-04-21 06:47
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
3,623 by rmoretti
Wed, 2018-11-21 14:11
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
3,627 by doranhen
Mon, 2014-04-21 06:47
Normal topic Rosetta numbering with missing occupancies
by ShaneOConnor » Fri, 2011-10-07 16:18
2
3,628 by ShaneOConnor
Mon, 2014-04-21 06:47
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
3,638 by smlewis
Mon, 2014-04-21 06:47
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
3,644 by szypanther
Mon, 2014-05-26 22:03
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
3,647 by jklett
Mon, 2014-04-21 06:47
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22
3
3,649 by smlewis
Mon, 2014-04-21 06:47
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
3,667 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Only 430 models are generated for membrane prediction
by justin » Wed, 2010-01-06 00:04
3
3,669 by smlewis
Mon, 2014-04-21 06:47
Normal topic first run of abinitio in rosetta 3.2 produces an error right away
by burkheadlab » Fri, 2011-03-04 22:50
3
3,672 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
3,686 by ssrb
Tue, 2018-03-06 14:15
Normal topic Docking 2 proteins including ligands
by einew » Tue, 2011-03-08 13:33
3
3,689 by einew
Mon, 2014-04-21 06:47
Normal topic homo-oligomeric proteins.............folddock+symmetry+abinito
by anusmita_sahoo » Thu, 2010-04-29 02:59
2
3,700 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
3,711 by matteoferla
Wed, 2019-11-20 02:32
Normal topic Rosetta can't handle symmetric fold and dock for >10-subunit protein?
by myang » Mon, 2011-09-26 11:52
3
3,712 by IAndre
Mon, 2014-04-21 06:47
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
3,724 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
3,725 by Matthys
Mon, 2014-04-21 06:47
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
3,733 by alejandro
Mon, 2014-04-21 06:47
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
3,734 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
3,743 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
3,745 by smlewis
Mon, 2016-08-22 10:28
Normal topic Homology modeling
by mchldln » Mon, 2009-08-17 13:04
2
3,745 by smlewis
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
3,753 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
3,758 by phanvy
Mon, 2014-04-21 03:58
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
3,770 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
3,774 by cossio
Wed, 2014-12-03 14:51
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
3,786 by smlewis
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,797 by jarek
Mon, 2014-04-21 06:48
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
3,801 by harshkhare
Mon, 2014-04-21 06:47
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07
3
3,808 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
3,809 by rmoretti
Thu, 2014-04-10 07:38
Normal topic build parallel version of Rosetta
by atfrank » Tue, 2009-10-06 22:33
2
3,812 by smlewis
Mon, 2014-04-21 06:47
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
3,812 by smlewis
Tue, 2017-04-18 08:33
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
3,822 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
3,839 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
3,842 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Hbond tripped
by alejandro » Mon, 2011-11-21 04:17
3
3,853 by alejandro
Mon, 2014-04-21 06:47
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
3,854 by linucks
Mon, 2017-07-03 09:50
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
3,855 by scombs
Mon, 2014-04-21 06:47
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
3,863 by rmoretti
Mon, 2016-11-14 14:21
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
3,863 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
3,870 by Awagner7
Tue, 2020-04-28 10:51
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
3,871 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
3,872 by sumukh21
Mon, 2014-04-21 06:47
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