You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
2 |
3,387 |
by monos_morpheus Mon, 2014-04-21 06:47 |
|
|
RosettaDesign Server, reproducing optimized interface conformation by AlexanderMetz » Thu, 2012-02-09 10:41 |
1 |
3,399 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
3,414 |
by smlewis Mon, 2018-12-31 08:58 |
|
|
RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
2 |
3,416 |
by ac.research Sat, 2019-08-03 08:12 |
|
|
how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
3 |
3,418 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
3 |
3,421 |
by rmoretti Mon, 2016-03-07 14:20 |
|
|
how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
3 |
3,424 |
by smlewis Fri, 2016-07-29 07:43 |
|
|
Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
2 |
3,429 |
by jos Mon, 2014-04-21 06:47 |
|
|
Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
3 |
3,429 |
by matteoferla Mon, 2018-02-26 02:05 |
|
|
MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
1 |
3,440 |
by smlewis Sun, 2017-11-19 20:08 |
|
|
Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
3,448 |
by jrcf Fri, 2016-02-12 16:41 |
|
|
Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
2 |
3,450 |
by ctaylor Mon, 2014-04-21 06:47 |
|
|
Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
3,450 |
by Srinivas23 Tue, 2017-10-24 10:58 |
|
|
Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
1 |
3,452 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 12:58 |
12 |
3,455 |
by kwu030 Thu, 2023-05-18 08:31 |
|
|
Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
3,458 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
|
|
Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
3 |
3,461 |
by aaxx Wed, 2019-11-06 01:44 |
|
|
sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
3 |
3,463 |
by rmoretti Mon, 2015-05-25 11:00 |
|
|
obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
3 |
3,465 |
by scombs Mon, 2014-04-21 06:47 |
|
|
fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
3 |
3,468 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
|
|
ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
3 |
3,479 |
by ela Thu, 2018-08-09 08:04 |
|
|
Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
3 |
3,488 |
by ac.research Sun, 2017-09-24 11:25 |
|
|
How to use Rosetta 3.1 to model the structure of an antibody? by sylvia » Mon, 2009-10-26 14:06 |
2 |
3,491 |
by vanita Mon, 2014-04-21 06:47 |
|
|
CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
3 |
3,493 |
by SenyorDrew Tue, 2016-06-14 06:43 |
|
|
should rosetta3.1 do prepacking before docking? by lqzhang » Thu, 2010-01-07 12:15 |
3 |
3,495 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
3 |
3,500 |
by PaulaBanks Mon, 2014-04-21 06:48 |
|
|
Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
2 |
3,502 |
by ytao Mon, 2014-04-21 06:48 |
|
|
positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
1 |
3,504 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
4 |
3,504 |
by rmoretti Fri, 2018-08-03 11:39 |
|
|
Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
3 |
3,508 |
by ctaylor Mon, 2014-04-21 06:47 |
|
|
why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
3 |
3,511 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
2 |
3,513 |
by rmoretti Tue, 2014-06-03 11:45 |
|
|
Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
2 |
3,515 |
by rmoretti Thu, 2018-06-28 14:09 |
|
|
How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
1 |
3,516 |
by rmoretti Wed, 2014-12-03 18:52 |
|
|
# decoys of silent by fred » Wed, 2014-04-02 06:00 |
3 |
3,526 |
by fred Fri, 2014-04-04 11:34 |
|
|
Silent Files by ctaylor » Tue, 2009-12-22 09:22 |
3 |
3,532 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Pairwise decomposable terms in the Rosetta energy function by pgainza » Wed, 2011-08-03 12:26 |
1 |
3,539 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
1 |
3,540 |
by smlewis Fri, 2016-07-22 07:31 |
|
|
Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,543 |
by inder Mon, 2014-04-21 06:47 |
|
|
Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
1 |
3,554 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
3 |
3,557 |
by rmoretti Mon, 2014-09-29 13:45 |
|
|
Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
1 |
3,558 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
3 |
3,558 |
by rmoretti Sun, 2015-07-05 14:28 |
|
|
secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
1 |
3,570 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
3 |
3,572 |
by phanvy Wed, 2014-07-02 23:32 |
|
|
interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
3 |
3,572 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
3 |
3,572 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
1 |
3,575 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
3 |
3,577 |
by rmoretti Thu, 2015-09-17 12:42 |
|
|
NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
3 |
3,579 |
by mpiuzzi Mon, 2014-04-21 06:47 |
|
|
AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
3 |
3,582 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
2 |
3,584 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
4 |
3,588 |
by rmoretti Wed, 2018-11-21 14:11 |
|
|
Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
3,589 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta numbering with missing occupancies by ShaneOConnor » Fri, 2011-10-07 16:18 |
2 |
3,597 |
by ShaneOConnor Mon, 2014-04-21 06:47 |
|
|
fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
2 |
3,599 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
3 |
3,619 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
3 |
3,619 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
3,621 |
by szypanther Mon, 2014-05-26 22:03 |
|
|
Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
3 |
3,622 |
by jklett Mon, 2014-04-21 06:47 |
|
|
Rosetta relax application for generating ensemble of structures. by abhi_pe_acharya » Mon, 2018-02-26 09:08 |
3 |
3,632 |
by ssrb Tue, 2018-03-06 14:15 |
|
|
Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
2 |
3,639 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
3 |
3,644 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
3 |
3,645 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
5 |
3,652 |
by matteoferla Wed, 2019-11-20 02:32 |
|
|
Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
3 |
3,670 |
by einew Mon, 2014-04-21 06:47 |
|
|
homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
2 |
3,679 |
by biofisikx Mon, 2014-04-21 06:47 |
|
|
Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
3 |
3,684 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
3,685 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
|
|
Fix missing backbone residues by Matthys » Mon, 2010-05-03 09:03 |
2 |
3,701 |
by Matthys Mon, 2014-04-21 06:47 |
|
|
Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
3 |
3,705 |
by alejandro Mon, 2014-04-21 06:47 |
|
|
Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
3 |
3,709 |
by smlewis Mon, 2016-08-22 10:28 |
|
|
I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
2 |
3,715 |
by monos_morpheus Mon, 2014-04-21 06:47 |
|
|
ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
3 |
3,720 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
2 |
3,720 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: PDB reader is ignoring atom by phanvy » Wed, 2014-04-16 17:59 |
2 |
3,722 |
by phanvy Mon, 2014-04-21 03:58 |
|
|
what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
3 |
3,725 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
2 |
3,726 |
by cossio Wed, 2014-12-03 14:51 |
|
|
Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
3 |
3,738 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
|
energy units by jtmacd » Mon, 2009-07-06 10:39 |
1 |
3,764 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,767 |
by jarek Mon, 2014-04-21 06:48 |
|
|
Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
3,769 |
by scombs Mon, 2014-04-21 06:47 |
|
|
Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
1 |
3,772 |
by smlewis Tue, 2017-04-18 08:33 |
|
|
ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
3 |
3,772 |
by harshkhare Mon, 2014-04-21 06:47 |
|
|
backrub score different from calculated score by attesor » Wed, 2014-04-09 07:34 |
3 |
3,774 |
by rmoretti Thu, 2014-04-10 07:38 |
|
|
How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
3 |
3,780 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
build parallel version of Rosetta by atfrank » Tue, 2009-10-06 22:33 |
2 |
3,789 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
3 |
3,791 |
by SergeyP Thu, 2016-02-04 00:07 |
|
|
Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
3 |
3,807 |
by gipsonb Mon, 2014-04-21 06:47 |
|
|
Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
4 |
3,813 |
by linucks Mon, 2017-07-03 09:50 |
|
|
Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
3,814 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
3 |
3,815 |
by alejandro Mon, 2014-04-21 06:47 |
|
|
Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
4 |
3,817 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
|
|
DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
3,832 |
by rmoretti Mon, 2016-11-14 14:21 |
|
|
Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
1 |
3,839 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
2 |
3,840 |
by Awagner7 Tue, 2020-04-28 10:51 |
|
|
make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
3 |
3,845 |
by sumukh21 Mon, 2014-04-21 06:47 |
|
|
RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
3 |
3,847 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
3,850 |
by rmoretti Sat, 2017-12-16 12:19 |
|
|
The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
2 |
3,854 |
by jrcf Fri, 2015-10-16 10:57 |
Log in to post new content in the forum.
