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Rosetta 3 - General

Topic / Topic starter Replies Viewssort ascending Last post
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
2,284 by smlewis
Mon, 2014-04-21 06:47
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
2,269 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
2,265 by MA
Thu, 2017-04-27 18:53
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
2,265 by ylwang
Sat, 2019-11-23 06:26
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
2,260 by smlewis
Mon, 2014-04-21 06:47
Normal topic clean_pdb.py
by duz » Wed, 2021-03-24 13:36
2
2,259 by duz
Thu, 2021-04-01 09:34
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
2,259 by smlewis
Mon, 2014-04-21 06:48
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
2,257 by smlewis
Mon, 2014-04-21 06:47
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
2,256 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
2,254 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
2,254 by rmoretti
Mon, 2014-06-09 10:05
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
2,253 by ahmadkhalifa
Wed, 2017-12-06 12:30
Normal topic H3 modelling scoring function
by aneamtu » Wed, 2017-12-27 23:10
2
2,251 by aneamtu
Mon, 2018-01-08 23:49
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
2,248 by smlewis
Mon, 2014-04-21 06:47
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
2,246 by rmoretti
Mon, 2015-05-25 11:07
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
2,241 by smlewis
Mon, 2014-04-21 06:47
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
2,241 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
2,240 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
2,240 by rmoretti
Tue, 2014-06-10 11:34
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
2,240 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
2,236 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
2,234 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
2,227 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
2,223 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
3
2,223 by Brian Wiley
Sat, 2023-02-04 23:26
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
2,222 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
2,221 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
2,220 by smlewis
Mon, 2014-04-21 06:47
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
2,216 by rmoretti
Tue, 2018-01-30 09:08
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
2,215 by smlewis
Mon, 2014-04-21 06:47
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
2,215 by smlewis
Thu, 2016-08-11 13:16
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
2,211 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
2,208 by yuvals
Mon, 2014-10-06 15:02
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
2,204 by yarovoy
Wed, 2016-03-30 12:37
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
2,203 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
2,198 by rmoretti
Wed, 2015-02-18 09:17
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
2,197 by rmoretti
Mon, 2014-05-12 07:50
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
2,197 by rmoretti
Wed, 2015-09-02 12:48
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
2,197 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
2,194 by smlewis
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
2,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
2,192 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
2,188 by nawsad
Fri, 2014-06-20 02:48
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
2,188 by jkleman
Tue, 2018-07-31 13:19
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
2,180 by smlewis
Mon, 2014-04-21 06:47
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
2,180 by frichter
Mon, 2014-04-21 06:47
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
2,180 by rmoretti
Mon, 2017-05-15 09:03
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
2,179 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
2,177 by sid
Mon, 2014-04-21 06:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
2,176 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
2,175 by albumns
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
2,172 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
2,171 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
2,170 by smlewis
Mon, 2018-03-12 09:57
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
2,158 by smlewis
Mon, 2014-04-21 06:47
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
2,156 by smlewis
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
2,156 by fred
Mon, 2014-04-21 06:47
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
2,154 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
2,152 by nleroy
Fri, 2019-11-08 12:44
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
2,151 by smlewis
Mon, 2014-04-21 06:47
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
2,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
2,144 by frichter
Mon, 2014-04-21 06:47
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
2,143 by jalan
Sun, 2020-04-12 08:01
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
2,137 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
2,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking using rosetta3.1 and rosetta2.3 leads to very different results
by lqzhang » Thu, 2010-01-14 11:54
1
2,133 by sid
Mon, 2014-04-21 06:47
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
2,132 by rmoretti
Fri, 2014-09-12 09:11
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
2,132 by rmoretti
Wed, 2015-06-17 12:43
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
2,128 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
2,128 by rmoretti
Tue, 2016-07-12 08:43
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
2,128 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
2,126 by rmoretti
Tue, 2014-11-11 13:22
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
2,124 by Lati
Fri, 2015-11-20 03:32
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
2,123 by rmoretti
Tue, 2014-11-04 10:35
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
2,121 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
2,116 by sheehajh
Thu, 2018-02-08 21:18
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
1
2,115 by paulbo
Sun, 2024-02-04 22:03
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
2,115 by rmoretti
Thu, 2016-04-28 15:49
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
2,114 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
2,114 by smlewis
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
2,113 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
2,110 by smlewis
Mon, 2014-04-21 06:47
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
2,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
2,106 by rmoretti
Thu, 2018-06-28 14:28
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
2,103 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
2,098 by rmoretti
Sun, 2016-02-21 06:38
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
2,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
2,093 by orionshih
Tue, 2018-05-01 21:16
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
2,089 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
2,086 by zhoubin
Mon, 2021-03-01 22:11
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
2,083 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
2,083 by rmoretti
Fri, 2019-03-29 14:43
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
2,083 by rmoretti
Mon, 2018-01-15 14:35
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
2,075 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Rosetta-foldtree and docking
by tingting » Tue, 2022-03-15 22:49
5
2,074 by aastha.pal
Mon, 2022-06-27 09:55
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
2,074 by smlewis
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
2,074 by rmoretti
Fri, 2015-07-03 13:14
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
2,073 by rmoretti
Mon, 2016-11-14 15:12
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
2,073 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
2,072 by rmoretti
Mon, 2015-03-30 16:38
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