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Rosetta++ - General

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Sticky topic Sticky: READ ME FIRST
by rmoretti » Fri, 2015-09-04 15:23
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3,272 by rmoretti
Tue, 2017-06-20 08:48
Normal topic run_prof.py
by joseph » Fri, 2010-11-05 14:38
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1,865 by joseph
Mon, 2014-04-21 06:47
Normal topic Input files of RosettaDNA mode
by r96631028 » Tue, 2009-04-28 04:39
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1,686 by r96631028
Mon, 2014-04-21 06:47
Normal topic Rosetta stops while generating decoys
by jjan » Wed, 2010-01-13 00:45
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1,821 by jjan
Mon, 2014-04-21 06:47
Normal topic rosetta antibody model, the option -snug_fit
by jarod » Thu, 2010-04-01 18:30
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2,096 by jarod
Mon, 2014-04-21 06:47
Normal topic Docking Protocol ERROR
by bwp » Wed, 2009-04-08 08:41
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1,625 by bwp
Mon, 2014-04-21 06:47
Normal topic FAQ
by admin » Mon, 2010-08-30 04:22
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4,974 by admin
Sat, 2015-09-05 12:11
Normal topic How to build a parallel version of rosetta++ (Rosetta2.3.0) ?
by ice_flame » Fri, 2011-03-25 22:20
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2,364 by ice_flame
Mon, 2014-04-21 06:47
Normal topic Rosetta Academic Workshop Series
by xavier » Mon, 2009-01-26 11:50
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2,280 by xavier
Mon, 2014-04-21 06:47
Normal topic got here mapping777777 -1 at ~/rosetta/antibody/scripts/ram_blastscript.pl line 10
by wtscrystal » Mon, 2009-05-04 06:08
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1,700 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Why so wried way?
by dikov » Fri, 2010-03-05 04:57
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2,244 by dikov
Mon, 2014-04-21 06:47
Normal topic make fragment
by joseph » Sun, 2010-10-31 21:16
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1,905 by joseph
Mon, 2014-04-21 06:47
Normal topic Compiling Mpilan option
by TiagoGomes » Tue, 2009-04-21 05:34
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1,628 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic icc versus gcc and 64bit versus 32bit performances
by lcavallo » Fri, 2009-02-20 15:29
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1,583 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Thu, 2010-01-07 13:08
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1,845 by wszjzhang
Mon, 2014-04-21 06:47
Normal topic How to set gcc optimization level with scons to compile 64bit rosetta-2.3.0
by hazards » Fri, 2009-05-15 14:16
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3,431 by hazards
Mon, 2014-04-21 06:47
Normal topic Getting the scorefilter value from a calibration run
by lcavallo » Fri, 2009-03-20 06:18
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1,625 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Unrecognized Residues in RosettaDock
by mboggara » Sat, 2010-03-20 19:48
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1,971 by mboggara
Mon, 2014-04-21 06:47
Normal topic To add/include unusual amino acids in RosettaDesign
by shirleyzheng » Mon, 2009-07-06 09:34
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1,777 by shirleyzheng
Mon, 2014-04-21 06:47
Normal topic building parallel Rosetta 2.3 on a 64-bit machine
by dwoods » Mon, 2008-10-27 11:21
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1,367 by dwoods
Mon, 2014-04-21 06:47
Normal topic Re-building protocol crash
by murgantia » Sun, 2011-03-13 05:28
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1,833 by murgantia
Mon, 2014-04-21 06:47
Normal topic rosetta3 compliation
by sdh » Mon, 2009-05-04 03:16
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1,565 by sdh
Mon, 2014-04-21 06:47
Normal topic problems building rosetta 2.3.0 with icc
by lcavallo » Wed, 2009-03-04 05:32
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1,881 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Deb or rpm files?
by tlmcraig » Wed, 2008-08-20 23:24
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1,256 by tlmcraig
Mon, 2014-04-21 06:47
Normal topic Unable to determine sequence length from pdb file
by imartins » Tue, 2008-09-30 11:50
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1,268 by imartins
Mon, 2014-04-21 06:47
Normal topic -regions
by mdyini » Wed, 2009-11-25 15:35
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1,761 by mdyini
Mon, 2014-04-21 06:47
Normal topic Subclusters - what are they?
by Bob3k » Mon, 2009-06-15 05:58
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1,903 by Bob3k
Mon, 2014-04-21 06:47
Normal topic pose_ligand_docking? and constraint file...
by mdyini » Wed, 2009-07-01 20:13
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1,825 by mdyini
Mon, 2014-04-21 06:47
Normal topic Which vall version are make_fragment based on?
by lennylv » Thu, 2009-04-02 05:00
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1,677 by lennylv
Mon, 2014-04-21 06:47
Normal topic Consistency of interface DDG calculations
by JuliusSu » Sun, 2014-03-30 21:35
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1,346 by JuliusSu
Sun, 2014-03-30 21:35
Normal topic use of constraints
by anusmita_sahoo » Thu, 2010-06-10 10:54
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1,826 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Help with flexible backbone design
by neilcifer » Thu, 2008-11-20 10:45
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1,582 by neilcifer
Mon, 2014-04-21 06:47
Normal topic Cluster methodology
by TiagoGomes » Wed, 2009-04-29 11:53
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1,886 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic some posts from old forum
by admin » Tue, 2008-04-22 11:05
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2,132 by admin
Mon, 2014-04-21 06:47
Normal topic some Q/A about SnugDock
by jarod » Fri, 2010-04-30 20:02
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2,212 by jarod
Mon, 2014-04-21 06:47
Normal topic Timer
by Temsiri » Sun, 2008-11-09 06:57
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1,206 by Temsiri
Mon, 2014-04-21 06:47
Normal topic abinitio
by vamsi » Fri, 2008-11-21 12:21
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1,455 by vamsi
Mon, 2014-04-21 06:47
Normal topic Questions about -fix_natsc and -trim
by mdyini » Thu, 2009-06-11 13:27
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1,745 by mdyini
Mon, 2014-04-21 06:47
Normal topic Rosetta hangs while generating decoys
by lcavallo » Sat, 2009-03-07 02:11
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1,839 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Using dipolar coupling restraints in Rosetta v2.3
by pager2 » Mon, 2010-03-08 14:54
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2,140 by pager2
Mon, 2014-04-21 06:47
Normal topic Rosetta-2.3.0 build on fedora 9
by akneoh » Mon, 2008-11-17 16:22
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2,498 by Temsiri
Mon, 2014-04-21 06:47
Normal topic working with silent output - mergin, clustering and extracting
by kosa » Thu, 2008-05-15 05:54
1
2,046 by yiliu
Mon, 2014-04-21 06:47
Normal topic comparing 2 docking sites : howto ?
by lcavallo » Mon, 2009-07-27 13:38
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2,478 by sid
Mon, 2014-04-21 06:47
Normal topic MPI Rosetta
by pager2 » Fri, 2008-08-01 08:13
1
2,841 by yiliu
Mon, 2014-04-21 06:47
Normal topic Constraints on residue size
by yiliu » Thu, 2008-01-10 08:44
1
1,643 by yiliu
Mon, 2014-04-21 06:47
Normal topic Barcode constraint file
by rkhayat » Fri, 2009-05-15 16:02
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2,346 by davidk
Mon, 2014-04-21 06:47
Normal topic Rosetta and Membrane Proteins
by admin » Fri, 2008-04-18 15:26
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1,766 by admin
Mon, 2014-04-21 06:47
Normal topic Cluster is down..
by AndrewBworth » Wed, 2009-06-17 10:10
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2,408 by vanita
Mon, 2014-04-21 06:47
Normal topic starting sequence with flexible backbone design
by kmaksim » Mon, 2009-03-23 07:10
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2,187 by vanita
Mon, 2014-04-21 06:47
Normal topic RosettaDock and -flex_peptide
by pshannon » Tue, 2008-09-16 17:56
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1,708 by yiliu
Mon, 2014-04-21 06:47
Normal topic cluster_info_silent.out GLIB problem
by Jungi » Wed, 2009-07-08 01:35
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2,507 by Jungi
Mon, 2014-04-21 06:47
Normal topic Using -fibril mode
by jiyongpark.77 » Thu, 2008-11-20 19:18
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2,012 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic How to dock structures locally?
by rwn » Thu, 2008-05-15 07:26
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1,884 by yiliu
Mon, 2014-04-21 06:47
Normal topic sequence variability in rosetta design
by sdh » Thu, 2009-10-15 03:44
1
2,466 by smlewis
Mon, 2014-04-21 06:47
Normal topic module reconstruct_PDB_by_index module reconstruct_PDB_by_index
by yiliu » Thu, 2008-01-10 08:30
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1,756 by yiliu
Mon, 2014-04-21 06:47
Normal topic Difference between Eres, Ereduce, Enew?
by yiliu » Thu, 2008-01-10 08:48
1
2,211 by yiliu
Mon, 2014-04-21 06:47
Normal topic fragments library for starting structures having multiple chains
by mdyini » Thu, 2009-06-11 10:34
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2,702 by mdyini
Mon, 2014-04-21 06:47
Normal topic MinGW build problem
by tlmcraig » Thu, 2008-08-21 12:22
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2,836 by yiliu
Mon, 2014-04-21 06:47
Normal topic Piecing together multiple domains
by AndrewBworth » Mon, 2009-06-22 14:24
1
2,488 by vanita
Mon, 2014-04-21 06:47
Normal topic distance restrain rosetta 2.3
by sgrigna » Wed, 2009-03-25 08:42
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2,337 by vanita
Mon, 2014-04-21 06:47
Normal topic build error by MS Visual studio 2008
by jarod » Fri, 2010-05-07 22:45
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4,205 by jarod
Mon, 2014-04-21 06:47
Normal topic abinitio modeling
by vamsi » Mon, 2008-11-17 12:13
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1,724 by yiliu
Mon, 2014-04-21 06:47
Normal topic capping termini
by luanna » Mon, 2008-05-12 10:50
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2,020 by yiliu
Mon, 2014-04-21 06:47
Normal topic Is it possible to score interface in -score mode? **Solved**
by maperalta » Thu, 2009-07-23 10:29
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3,075 by maperalta
Mon, 2014-04-21 06:47
Normal topic cluster.pl fails to extract best centers
by rmosca » Tue, 2008-12-02 03:10
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2,234 by yiliu
Mon, 2014-04-21 06:47
Normal topic what is the F() in rosetta 2.3
by Lindsay » Fri, 2012-06-08 14:44
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2,377 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment generation - local vs server
by danzinho » Fri, 2008-07-25 02:09
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1,937 by yiliu
Mon, 2014-04-21 06:47
Normal topic How do you refine the native structure?
by yiliu » Thu, 2008-01-10 08:40
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1,958 by yiliu
Mon, 2014-04-21 06:47
Normal topic BLOUSE62
by AndrewBworth » Tue, 2009-06-16 13:32
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2,531 by vanita
Mon, 2014-04-21 06:47
Normal topic docking search: first residue centroids, then full atom?
by pshannon » Wed, 2008-09-03 15:46
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1,984 by yiliu
Mon, 2014-04-21 06:47
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic Compiling Rosetta++ 3.1 with alternate gcc
by fyros » Thu, 2010-07-22 13:32
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3,257 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Mon, 2009-08-03 07:54
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2,390 by Silice
Mon, 2014-04-21 06:47
Normal topic disulphides are only sometimes formed
by danzinho » Mon, 2009-01-19 08:42
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2,173 by yiliu
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Wed, 2009-10-14 04:46
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2,510 by brspurri
Mon, 2014-04-21 06:47
Normal topic ulfated tyrosine in Rosetta
by yiliu » Thu, 2008-01-10 08:29
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1,842 by yiliu
Mon, 2014-04-21 06:47
Normal topic how to score a pdb in rosetta 2.3
by Lindsay » Tue, 2012-07-17 08:42
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2,457 by smlewis
Mon, 2014-04-21 06:47
Normal topic multiple_processor
by yiliu » Thu, 2008-01-10 08:47
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1,773 by yiliu
Mon, 2014-04-21 06:47
Normal topic test.fasta and test.dat files are not available in Rosetta2.3.0
by suj88 » Mon, 2009-03-23 17:14
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2,263 by yiliu
Mon, 2014-04-21 06:47
Normal topic What's the difference between F and S labeled decoys?
by PaulaBanks » Mon, 2013-08-26 23:44
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2,262 by rmoretti
Mon, 2014-04-21 06:48
Normal topic GTP-bound proteins
by mbh » Thu, 2008-11-13 11:35
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1,789 by yiliu
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody, Fv without terminal 3 residues
by yuich » Sun, 2010-09-26 21:07
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2,932 by aroop
Mon, 2014-04-21 06:47
Normal topic resemble docking use rosettadock found rms=0 in output
by lqzhang » Sun, 2009-07-19 06:01
1
2,535 by lqzhang
Mon, 2014-04-21 06:47
Normal topic Fragment files for incomplet protein
by globalcoco » Sat, 2009-04-18 05:16
1
2,299 by vanita
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Fri, 2009-08-21 08:21
1
2,550 by jjz2009
Mon, 2014-04-21 06:47
Normal topic difference between score and bk_tot
by Lindsay » Wed, 2012-05-23 21:25
1
2,370 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta 2.1.1 troubleshooting
by yiliu » Thu, 2008-01-10 08:51
1
2,189 by yiliu
Mon, 2014-04-21 06:47
Normal topic Prepacking structures using RosettaDock on a Windows platform
by suj88 » Fri, 2009-03-13 14:20
1
3,448 by suj88
Mon, 2014-04-21 06:47
Normal topic how to calc the fa_rep in rosetta2.x?
by tianbu » Tue, 2012-07-31 08:38
1
3,317 by rmoretti
Mon, 2014-04-21 06:47
Normal topic distributed computing environment support?
by jarod » Sat, 2010-03-13 21:05
1
2,696 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Mon, 2011-01-17 04:52
1
2,572 by smlewis
Mon, 2014-04-21 06:47
Normal topic how long does it take?
by Piter_ » Thu, 2008-05-15 06:10
1
1,715 by Elin
Mon, 2014-04-21 06:47
Normal topic Scoring Weights
by AndrewBworth » Tue, 2009-07-28 18:08
1
2,724 by momeara
Mon, 2014-04-21 06:47
Normal topic terminus capping
by mbellows » Wed, 2009-10-07 11:16
1
3,101 by mboggara
Mon, 2014-04-21 06:47
Normal topic Examples in RosettaDock tutorials
by yiliu » Thu, 2008-01-10 08:27
1
2,292 by yiliu
Mon, 2014-04-21 06:47
Normal topic Compilation Error 1 after 'make gcc' command
by suj88 » Wed, 2009-02-25 14:24
1
5,628 by Bob3k
Mon, 2014-04-21 06:47
Normal topic compilation failure in 64-bit mode linux system
by kw8cr » Wed, 2010-02-24 22:21
1
3,730 by zdn3023
Mon, 2014-04-21 06:47
Normal topic rg cutoff
by yiliu » Thu, 2008-01-10 08:46
1
1,834 by yiliu
Mon, 2014-04-21 06:47
Normal topic Alanine Scanning of UbcH7- E6AP Interface
by suj88 » Mon, 2009-03-23 15:58
1
2,923 by kristiankrantz
Mon, 2014-04-21 06:47
Normal topic Computing ddg_binding
by hetu » Mon, 2008-09-29 19:11
1
1,992 by yiliu
Mon, 2014-04-21 06:47
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