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Rosetta++ - General

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Sticky topic Sticky: READ ME FIRST
by rmoretti » Fri, 2015-09-04 15:23
1
2,885 by rmoretti
Tue, 2017-06-20 08:48
Normal topic running multiple instances of rosetta
by yiliu » Thu, 2008-01-10 08:39
2
2,179 by kosa
Mon, 2014-04-21 06:47
Normal topic -no_filter flag in docking
by banshee » Tue, 2013-05-28 11:58
2
2,679 by banshee
Mon, 2014-04-21 06:47
Normal topic -regions
by mdyini » Wed, 2009-11-25 15:35
0
1,531 by mdyini
Mon, 2014-04-21 06:47
Normal topic /usr/bin/ld: cannot find -lmpi_cxx
by anusmita_sahoo » Fri, 2010-05-07 10:41
2
11,234 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Ab Initio
by vamsi » Fri, 2008-11-21 12:42
2
2,678 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sat, 2012-06-16 04:25
2
2,582 by kaue
Mon, 2014-04-21 06:47
Normal topic ab initio with restraint
by Elin » Thu, 2008-08-28 18:42
2
1,990 by Elin
Mon, 2014-04-21 06:47
Normal topic abinitio
by vamsi » Fri, 2008-11-21 12:21
0
1,265 by vamsi
Mon, 2014-04-21 06:47
Normal topic abinitio modeling
by vamsi » Mon, 2008-11-17 12:13
1
1,451 by yiliu
Mon, 2014-04-21 06:47
Normal topic about SASA interpretation
by tarajano » Fri, 2008-06-20 10:17
2
2,379 by tarajano
Mon, 2014-04-21 06:47
Normal topic About the code.What's the difference between ****.fwd.hh and ****.hh
by Run » Sat, 2013-07-20 23:51
2
3,564 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Alanine Scanning of UbcH7- E6AP Interface
by suj88 » Mon, 2009-03-23 15:58
1
2,593 by kristiankrantz
Mon, 2014-04-21 06:47
Normal topic all-atom modelling and clustering
by danzinho » Fri, 2008-07-25 02:02
2
1,775 by danzinho
Mon, 2014-04-21 06:47
Normal topic Barcode constraint file
by rkhayat » Fri, 2009-05-15 16:02
1
2,046 by davidk
Mon, 2014-04-21 06:47
Normal topic BLOUSE62
by AndrewBworth » Tue, 2009-06-16 13:32
1
2,179 by vanita
Mon, 2014-04-21 06:47
Normal topic build error by MS Visual studio 2008
by jarod » Fri, 2010-05-07 22:45
1
3,772 by jarod
Mon, 2014-04-21 06:47
Normal topic Build Problem on 64 bit Gentoo
by spetzjoe » Thu, 2008-11-20 12:24
3
3,477 by dberkholz
Mon, 2014-04-21 06:47
Normal topic Building a PDB from a set of internal coordinates.
by jcminerlanl » Mon, 2017-03-06 09:47
2
2,174 by rbhatta8
Tue, 2017-03-07 07:22
Normal topic building parallel Rosetta 2.3 on a 64-bit machine
by dwoods » Mon, 2008-10-27 11:21
0
1,166 by dwoods
Mon, 2014-04-21 06:47
Normal topic Can not build the parallel version of rosetta-2.3.1 (the SnugDock). Help!!
by ice_flame » Fri, 2011-11-11 07:53
4
3,607 by ice_flame
Mon, 2014-04-21 06:47
Normal topic Can Rosetta Antibody build a good model for a new sequence??
by ice_flame » Fri, 2011-04-22 17:56
2
4,268 by Sherpaman
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Thu, 2010-01-07 13:08
0
1,609 by wszjzhang
Mon, 2014-04-21 06:47
Normal topic capping termini
by luanna » Mon, 2008-05-12 10:50
1
1,715 by yiliu
Mon, 2014-04-21 06:47
Normal topic Cluster is down..
by AndrewBworth » Wed, 2009-06-17 10:10
1
2,064 by vanita
Mon, 2014-04-21 06:47
Normal topic Cluster methodology
by TiagoGomes » Wed, 2009-04-29 11:53
0
1,681 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic cluster.pl fails to extract best centers
by rmosca » Tue, 2008-12-02 03:10
1
1,892 by yiliu
Mon, 2014-04-21 06:47
Normal topic clustering_decoy
by icb_bio » Thu, 2008-05-08 18:34
14
6,891 by kosa
Mon, 2014-04-21 06:47
Normal topic cluster_info_silent.out GLIB problem
by Jungi » Wed, 2009-07-08 01:35
1
2,144 by Jungi
Mon, 2014-04-21 06:47
Normal topic command lines for rebuilding-and-refinement protocol
by Temsiri » Fri, 2008-08-29 08:54
2
1,938 by Temsiri
Mon, 2014-04-21 06:47
Normal topic comparing 2 docking sites : howto ?
by lcavallo » Mon, 2009-07-27 13:38
1
2,147 by sid
Mon, 2014-04-21 06:47
Normal topic Compilation Error 1 after 'make gcc' command
by suj88 » Wed, 2009-02-25 14:24
1
5,190 by Bob3k
Mon, 2014-04-21 06:47
Normal topic compilation failure in 64-bit mode linux system
by kw8cr » Wed, 2010-02-24 22:21
1
3,399 by zdn3023
Mon, 2014-04-21 06:47
Normal topic Compiles fine but seg faults on everything
by mckinneys » Thu, 2008-07-24 12:28
1
1,420 by yiliu
Mon, 2014-04-21 06:47
Normal topic Compiling Mpilan option
by TiagoGomes » Tue, 2009-04-21 05:34
0
1,429 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic Compiling Rosetta on Intel Macs running Leopard (OS X 10.5)
by pager2 » Tue, 2008-07-08 11:59
5
12,361 by rmoretti
Thu, 2014-06-05 11:17
Normal topic Compiling Rosetta++ 3.1 with alternate gcc
by fyros » Thu, 2010-07-22 13:32
1
2,875 by smlewis
Mon, 2014-04-21 06:47
Normal topic Computing ddg_binding
by hetu » Mon, 2008-09-29 19:11
1
1,557 by yiliu
Mon, 2014-04-21 06:47
Normal topic Consistency of interface DDG calculations
by JuliusSu » Sun, 2014-03-30 21:35
0
1,162 by JuliusSu
Sun, 2014-03-30 21:35
Normal topic Constraints on residue size
by yiliu » Thu, 2008-01-10 08:44
1
1,373 by yiliu
Mon, 2014-04-21 06:47
Normal topic de novo modeling of a dimer
by kosa » Wed, 2009-08-19 05:55
1
2,433 by yangshen
Mon, 2014-04-21 06:47
Normal topic Deb or rpm files?
by tlmcraig » Wed, 2008-08-20 23:24
0
1,084 by tlmcraig
Mon, 2014-04-21 06:47
Normal topic Difference between Eres, Ereduce, Enew?
by yiliu » Thu, 2008-01-10 08:48
1
1,883 by yiliu
Mon, 2014-04-21 06:47
Normal topic difference between score and bk_tot
by Lindsay » Wed, 2012-05-23 21:25
1
2,035 by smlewis
Mon, 2014-04-21 06:47
Normal topic distance restrain rosetta 2.3
by sgrigna » Wed, 2009-03-25 08:42
1
2,018 by vanita
Mon, 2014-04-21 06:47
Normal topic distributed computing environment support?
by jarod » Sat, 2010-03-13 21:05
1
2,310 by smlewis
Mon, 2014-04-21 06:47
Normal topic disulfid bonds
by blaumbaer » Wed, 2008-04-30 10:21
5
5,103 by khorvash
Thu, 2017-01-19 15:05
Normal topic disulphides are only sometimes formed
by danzinho » Mon, 2009-01-19 08:42
1
1,872 by yiliu
Mon, 2014-04-21 06:47
Normal topic Docking Protocol ERROR
by bwp » Wed, 2009-04-08 08:41
0
1,418 by bwp
Mon, 2014-04-21 06:47
Normal topic docking search: first residue centroids, then full atom?
by pshannon » Wed, 2008-09-03 15:46
1
1,682 by yiliu
Mon, 2014-04-21 06:47
Normal topic Docking with pose_loops - frustration!
by mchldln » Wed, 2009-06-10 08:44
2
2,498 by mchldln
Mon, 2014-04-21 06:47
Normal topic Does any paper descript rosetta2.3's scoring function (fixbb )
by tianbu » Fri, 2012-07-27 14:50
3
3,488 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does rosetta 3.3 have different energy terms from 2.3 (fixbb design)
by Lindsay » Mon, 2012-07-16 13:12
4
4,002 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dunbrack rotamer energy term...
by tsjain » Mon, 2011-06-13 15:19
6
7,991 by qlj
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic ERROR:: Can't find starting structure: ../prepack/test.pdb
by tru » Thu, 2008-04-24 07:25
4
4,140 by yiliu
Mon, 2014-04-21 06:47
Normal topic Examples in RosettaDock tutorials
by yiliu » Thu, 2008-01-10 08:27
1
1,962 by yiliu
Mon, 2014-04-21 06:47
Normal topic extract pdb file from silent file .out
by anusmita_sahoo » Sun, 2010-05-16 23:50
1
2,860 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic FAQ
by admin » Mon, 2010-08-30 04:22
0
4,570 by admin
Sat, 2015-09-05 12:11
Normal topic flexible backbone design with multiple chains
by lesi » Thu, 2009-06-18 14:57
2
3,005 by lqzhang
Mon, 2014-04-21 06:47
Normal topic Flexible-backbone Rosetta design (partial flexibility)
by shirleyzheng » Mon, 2009-05-11 11:27
1
2,128 by marthapedraza
Mon, 2014-04-21 06:47
Normal topic Fragment files for incomplet protein
by globalcoco » Sat, 2009-04-18 05:16
1
1,983 by vanita
Mon, 2014-04-21 06:47
Normal topic fragment generation - local vs server
by danzinho » Fri, 2008-07-25 02:09
1
1,675 by yiliu
Mon, 2014-04-21 06:47
Normal topic fragments library for starting structures having multiple chains
by mdyini » Thu, 2009-06-11 10:34
1
2,353 by mdyini
Mon, 2014-04-21 06:47
Normal topic Getting the scorefilter value from a calibration run
by lcavallo » Fri, 2009-03-20 06:18
0
1,427 by lcavallo
Mon, 2014-04-21 06:47
Normal topic got here mapping777777 -1 at ~/rosetta/antibody/scripts/ram_blastscript.pl line 10
by wtscrystal » Mon, 2009-05-04 06:08
0
1,507 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic GTP-bound proteins
by mbh » Thu, 2008-11-13 11:35
1
1,493 by yiliu
Mon, 2014-04-21 06:47
Normal topic Help with flexible backbone design
by neilcifer » Thu, 2008-11-20 10:45
0
1,363 by neilcifer
Mon, 2014-04-21 06:47
Normal topic help!!!
by yiliu » Thu, 2008-01-10 08:33
1
1,423 by yiliu
Mon, 2014-04-21 06:47
Normal topic how do I repeat relax runs and get scoring functions at every state
by Temsiri » Mon, 2008-11-03 19:42
3
2,243 by vanita
Mon, 2014-04-21 06:47
Normal topic How do you refine the native structure?
by yiliu » Thu, 2008-01-10 08:40
1
1,679 by yiliu
Mon, 2014-04-21 06:47
Normal topic how do you test if your rosetta.xxx is indeed correctly built?
by tru » Thu, 2008-04-24 08:04
4
4,189 by tru
Mon, 2014-04-21 06:47
Normal topic How does Rosetta calculate rms?
by rwn » Thu, 2008-05-15 07:41
9
12,920 by rmoretti
Tue, 2014-10-14 08:05
Normal topic how long does it take?
by Piter_ » Thu, 2008-05-15 06:10
1
1,425 by Elin
Mon, 2014-04-21 06:47
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 00:41
2
1,761 by Jeffrey_Chen
Tue, 2014-03-25 23:29
Normal topic How to build a parallel version of rosetta++ (Rosetta2.3.0) ?
by ice_flame » Fri, 2011-03-25 22:20
0
2,079 by ice_flame
Mon, 2014-04-21 06:47
Normal topic how to calc the fa_rep in rosetta2.x?
by tianbu » Tue, 2012-07-31 08:38
1
2,943 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to change the parameter weight in rosetta 2.3
by Lindsay » Tue, 2012-04-24 14:09
3
3,197 by Lindsay
Mon, 2014-04-21 06:47
Normal topic How to dock structures locally?
by rwn » Thu, 2008-05-15 07:26
1
1,585 by yiliu
Mon, 2014-04-21 06:47
Normal topic how to get around no sequence for de novo design?
by neilcifer » Mon, 2008-10-06 15:01
3
2,436 by huxz
Mon, 2014-04-21 06:47
Normal topic How to model a protein that dimerizes to a small molecule?
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic How to reconstruct full atom structure from silent file
by kosa » Mon, 2008-06-23 07:25
7
5,049 by yiliu
Mon, 2014-04-21 06:47
Normal topic how to score a pdb in rosetta 2.3
by Lindsay » Tue, 2012-07-17 08:42
1
2,105 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set gcc optimization level with scons to compile 64bit rosetta-2.3.0
by hazards » Fri, 2009-05-15 14:16
0
3,144 by hazards
Mon, 2014-04-21 06:47
Normal topic icc versus gcc and 64bit versus 32bit performances
by lcavallo » Fri, 2009-02-20 15:29
0
1,393 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Increase compactness of decoys
by kosa » Sat, 2008-06-21 12:47
5
2,946 by kosa
Mon, 2014-04-21 06:47
Normal topic Input files of RosettaDNA mode
by r96631028 » Tue, 2009-04-28 04:39
0
1,502 by r96631028
Mon, 2014-04-21 06:47
Normal topic Installation report and instructions: Ubuntu 8.10 64 bit
by TamirEr » Mon, 2009-01-12 11:18
4
5,472 by chinhsutran
Mon, 2014-04-21 06:47
Normal topic Interpreting Clustering Results
by PaulaBanks » Sat, 2013-06-08 23:41
2
3,926 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Is it possible to score interface in -score mode? **Solved**
by maperalta » Thu, 2009-07-23 10:29
1
2,734 by maperalta
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Mon, 2009-08-03 07:54
1
2,050 by Silice
Mon, 2014-04-21 06:47
Normal topic Linux Distros and Settings
by Brev » Tue, 2008-08-19 17:48
2
2,770 by sdarnell
Mon, 2014-04-21 06:47
Normal topic loop modeling with KIC mode
by wenchangyu2008 » Tue, 2010-03-02 06:05
2
3,211 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Loop modeling with multiple chains
by sonyadave » Tue, 2008-05-06 13:44
3
3,271 by sonyadave
Mon, 2014-04-21 06:47
Normal topic make fragment
by joseph » Sun, 2010-10-31 21:16
0
1,690 by joseph
Mon, 2014-04-21 06:47
Normal topic make_fragment
by icb_bio » Tue, 2008-05-06 22:12
7
5,692 by aork
Mon, 2014-04-21 06:47
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:42
4
4,041 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Wed, 2009-10-14 04:46
1
2,171 by brspurri
Mon, 2014-04-21 06:47
Normal topic membrane protein docking
by angel » Thu, 2008-10-23 08:50
2
2,415 by yiliu
Mon, 2014-04-21 06:47
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