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ROSIE - General

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Sticky topic Sticky: ROSIE FAQ
by Sergey » Mon, 2013-04-08 10:41
6
27,739 by G-Jade
Fri, 2020-12-18 22:40
Normal topic Score and I_sc in ROSIE symmetric_docking output
by AdoCbl » Sun, 2015-08-09 00:26
11
11,936 by rmoretti
Tue, 2015-11-24 16:33
Normal topic Regarding snugdock Ag-Ab score
by ss » Mon, 2018-12-10 14:47
7
4,784 by ss
Thu, 2019-01-03 09:08
Normal topic Rosie Server Docking2, wrong plots output?
by Conan » Tue, 2015-04-21 12:18
6
7,523 by AdoCbl
Sun, 2015-08-09 14:38
Normal topic Sequence Tolerance Failed
by Dstork » Tue, 2017-01-03 07:13
6
5,400 by Sergey
Mon, 2017-01-09 16:37
Normal topic how can i refine protein loop region contain nonstandard amino acid morespecifically Phosphoserine and phosphothreonine
by jai_INMAS » Thu, 2014-08-07 01:49
6
9,631 by jai_INMAS
Fri, 2014-08-15 08:02
Normal topic LIGAND APPEARS TO BE DOCKED INTO EMPTY SPACE
by gabeliluo1 » Wed, 2016-01-06 16:23
5
5,902 by rmoretti
Thu, 2016-02-04 07:39
Normal topic Antibody prediction with ROSIE failed
by Sunyp_IM » Wed, 2017-08-02 23:45
4
3,378 by Sergey
Thu, 2019-05-09 08:15
Normal topic Ways to improve ROSIE symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 13:39
4
5,332 by IAndre
Tue, 2015-09-29 08:10
Normal topic docking2 results seem to not have contacting residues
by wagnerek » Tue, 2015-10-27 10:30
4
5,185 by AdoCbl
Sun, 2015-11-15 08:10
Normal topic Academic domain not listed
by larae » Mon, 2022-05-02 02:50
4
437 by SKlab
Mon, 2022-05-16 09:12
Normal topic A table of residue-residue pair energies for residues which interact across the docking interface missing in output
by awaring » Mon, 2013-04-22 14:47
4
8,621 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking error Could not find essential file trigger-00001.ligand_docking_protocol
by iphan » Mon, 2016-09-12 10:58
4
4,913 by rmoretti
Mon, 2016-10-03 10:44
Normal topic Snugdock
by MIke Kent » Mon, 2019-12-16 22:10
4
2,921 by MIke Kent
Tue, 2019-12-24 08:02
Normal topic RMSD values in docking2 and symmetric_docking runs
by AdoCbl » Sun, 2015-08-09 00:48
4
5,922 by rmoretti
Fri, 2015-09-04 13:57
Normal topic ROSIE academic email verification
by Yang Xie » Fri, 2022-09-23 06:37
4
174 by Yang Xie
Fri, 2022-09-23 10:09
Normal topic Job 「№15623」has failed
by fglaser » Tue, 2015-07-07 00:17
3
4,829 by rmoretti
Tue, 2015-07-14 14:35
Normal topic Can you change background color of pdb file pictures?
by AdoCbl » Sun, 2015-08-09 01:47
3
4,395 by AdoCbl
Tue, 2015-08-18 19:17
Normal topic peptiderive problem
by Fatemeh Arabi » Fri, 2016-10-14 02:54
3
3,466 by Sergey
Mon, 2016-11-14 14:48
Normal topic Numbering failed
by Sbrendle » Mon, 2017-06-05 08:07
3
3,406 by rmoretti
Thu, 2017-06-29 07:58
Normal topic How to run PLOT LHOC on Results from Rosie Server
by sujigeorge1979 » Mon, 2019-06-10 19:32
3
2,269 by jeliazkov
Mon, 2019-06-24 11:49
Normal topic docking2: will the real prepacked PDB stand up?
by David Weis » Tue, 2017-02-21 10:04
3
3,164 by rmoretti
Tue, 2017-02-28 08:34
Normal topic docking2: local_docking vs docking_local_refine
by AdoCbl » Sat, 2015-08-08 23:57
3
4,541 by AdoCbl
Wed, 2015-08-26 19:44
Normal topic Error Fasta file
by gabrielab » Mon, 2022-08-15 00:41
3
224 by Sergey
Mon, 2022-08-29 12:43
Normal topic problems with docking
by msironi » Thu, 2016-10-27 00:46
3
3,511 by Sergey
Mon, 2016-11-21 11:03
Normal topic Fv modelling Job Mab_Top 「№33253」
by pr.henriques » Wed, 2017-07-12 03:13
3
3,117 by rmoretti
Thu, 2017-07-13 15:19
Normal topic Problems with the RNA Denovo server
by mariaclausen » Tue, 2014-11-25 01:45
2
3,435 by mariaclausen
Thu, 2014-11-27 01:30
Normal topic Linear peptide versus cyclic peptide binding prediction
by gabr » Mon, 2019-11-18 12:25
2
2,224 by gabr
Tue, 2019-11-19 13:57
Normal topic Supercharge server
by alva » Wed, 2014-07-02 17:36
2
3,910 by hooria
Mon, 2016-06-13 11:08
Normal topic How to change your ROSIE username or password?
by AdoCbl » Sun, 2015-08-09 00:08
2
3,482 by AdoCbl
Tue, 2015-08-18 19:09
Normal topic sequence_tolerance queue stuck
by Fred Muskett » Fri, 2021-09-03 08:08
2
647 by line
Fri, 2022-02-25 00:40
Normal topic Docking-Error 500
by edebenedictis » Wed, 2016-08-03 12:34
2
2,876 by Sergey
Wed, 2016-08-03 14:21
Normal topic How to improve ROSIE docking2 results?
by AdoCbl » Sun, 2015-08-09 01:22
2
3,507 by AdoCbl
Tue, 2015-08-18 19:19
Normal topic Fnat=NaN in a docking2 job
by AdoCbl » Sun, 2015-10-18 12:19
2
3,497 by AdoCbl
Sun, 2015-10-18 15:52
Normal topic pKa job submitting problem
by syoifczeri » Tue, 2015-02-17 21:41
2
3,386 by syoifczeri
Wed, 2015-02-18 19:15
Normal topic Academic domain missing
by yoann.vial » Wed, 2022-04-13 00:20
2
297 by Sergey
Fri, 2022-04-15 10:20
Normal topic Antibody Server is down
by Jogi » Thu, 2012-06-21 04:50
2
4,884 by Sergey
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking Jobs not running
by Flaviyan » Wed, 2014-02-05 06:41
2
5,533 by AdoCbl
Sat, 2015-08-08 22:38
Normal topic supercharge problems
by hooria » Tue, 2016-06-14 05:29
2
2,999 by smlewis
Wed, 2016-06-15 07:50
Normal topic Academic address
by almeida85 » Mon, 2022-09-26 07:25
2
60 by almeida85
Thu, 2022-09-29 00:10
Normal topic Ligand docking score.sc file containing more structures than produced
by Delfosse57 » Sat, 2022-07-16 10:44
2
197 by Delfosse57
Mon, 2022-07-18 11:09
Normal topic Error 500 Docking protein
by Sherpaman » Tue, 2014-05-27 01:32
2
3,510 by Sergey
Wed, 2014-05-28 13:16
Normal topic Docking2: Mismatch between score file and graph
by Ashafix » Sat, 2014-11-29 07:44
2
3,585 by AdoCbl
Sun, 2015-08-09 14:37
Normal topic My academic institution domain is not listed.
by mebigi » Fri, 2022-04-08 07:44
2
331 by mebigi
Mon, 2022-04-11 16:35
Normal topic CDR are not being recognized
by wildchipiron » Mon, 2016-05-23 15:03
2
2,982 by nmarze
Wed, 2016-05-25 14:54
Normal topic Output format
by Michele Tavanti » Sat, 2015-04-25 05:03
2
3,184 by Conan
Sat, 2015-04-25 11:31
Normal topic Academic address not verified during rosie login
by s.shankar » Thu, 2022-07-14 09:40
2
196 by s.shankar
Fri, 2022-07-15 12:31
Normal topic FARFAR2 error
by lijunnju » Tue, 2020-02-11 08:09
2
1,864 by Lipgloss
Mon, 2020-04-20 01:56
Normal topic proteins.pdb: Not enough chains in submitted protein! [At least 2 chains should be present, found chains: [u'A']...]
by Loki01 » Mon, 2018-03-19 13:34
2
2,355 by Loki01
Mon, 2018-03-19 13:45
Normal topic Does Snugdock remodeling of H3 loops include the kink constraint as in RosettaAntibody?
by MIke Kent » Wed, 2019-03-27 10:09
2
1,836 by MIke Kent
Thu, 2019-03-28 11:26
Normal topic 504 Gateway Time-out
by larae » Wed, 2022-08-31 03:38
2
108 by Sergey
Wed, 2022-08-31 09:12
Normal topic Stepwise error
by debostuti » Wed, 2021-10-06 08:57
2
519 by debostuti
Fri, 2021-10-08 00:29
Normal topic Docking results
by sujigeorge1979 » Wed, 2019-06-12 23:40
1
1,365 by jeliazkov
Mon, 2019-06-17 06:07
Normal topic chothia numbering error of FR_L1
by Sbrendle » Mon, 2016-08-22 06:58
1
2,062 by nmarze
Mon, 2016-08-22 11:57
Normal topic Antibody job failed
by larae » Fri, 2022-03-25 11:04
1
269 by rmoretti
Tue, 2022-03-29 15:14
Normal topic RMSD - Score
by LT » Thu, 2017-02-23 12:59
1
2,172 by rmoretti
Thu, 2017-02-23 13:03
Normal topic academic institution domain is not listed
by minzhi » Mon, 2022-05-16 14:26
1
233 by Sergey
Wed, 2022-05-18 14:05
Normal topic RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs
by AdoCbl » Sun, 2015-10-18 12:49
1
2,391 by IAndre
Mon, 2015-10-19 01:19
Normal topic Academic email
by Timothius » Sun, 2022-07-24 15:51
1
185 by Sergey
Thu, 2022-07-28 14:28
Normal topic Cannot confirm registration to the Rosie site
by fglaser » Sun, 2013-10-13 02:52
1
9,316 by Sergey
Mon, 2014-04-21 06:48
Normal topic Problem in refinement job in Docking2
by aninditaseal » Fri, 2016-04-22 07:12
1
2,090 by Sergey
Fri, 2016-04-22 11:13
Normal topic academic_address
by Natalia » Fri, 2022-09-16 12:27
1
87 by rmoretti
Fri, 2022-09-16 13:50
Normal topic ddG_RNA final energy different when modeling WT sequence
by AlexLukasiewicz » Tue, 2022-01-25 14:41
1
328 by Ajlukasiewicz
Fri, 2022-09-09 12:24
Normal topic RMSD
by jessye » Tue, 2019-07-02 01:54
1
1,701 by rmoretti
Tue, 2019-07-09 09:49
Normal topic Academic domains list
by aozalevsky » Tue, 2022-05-24 09:24
1
218 by rmoretti
Wed, 2022-05-25 08:25
Normal topic Comparing Protein-Protein Docking interactions between WT and mutant proteins
by dflaher » Fri, 2017-11-03 06:18
1
1,973 by rmoretti
Fri, 2017-12-01 11:21
Normal topic academic email
by rhn » Wed, 2022-08-17 12:44
1
127 by Sergey
Thu, 2022-08-18 13:34
Normal topic download decoy structures as .tar file?
by deplazes » Fri, 2014-11-21 19:25
1
3,005 by Ashafix
Sat, 2014-11-29 07:00
Normal topic free Energy Calculation?
by Sduenas » Thu, 2015-06-25 12:18
1
3,385 by rmoretti
Fri, 2015-07-03 11:56
Normal topic Academic address not verified during rosie login
by pomden31 » Thu, 2022-05-26 10:04
1
215 by Sergey
Thu, 2022-05-26 10:21
Normal topic Rosie Docking Server-Energy function
by jsv » Fri, 2017-07-21 08:26
1
1,778 by ssrb
Fri, 2017-07-21 09:29
Normal topic Academic email
by Morteza Ghandadi » Sun, 2022-07-17 00:36
1
160 by rmoretti
Mon, 2022-07-18 06:59
Normal topic Protein protein docking
by drrahulsuresh » Wed, 2018-05-02 12:52
1
1,794 by smlewis
Thu, 2018-05-03 11:45
Normal topic Bound Ligand Protein-Protein Docking
by ajaniharesh » Mon, 2019-04-08 12:18
1
1,315 by rmoretti
Thu, 2019-05-09 13:38
Normal topic Failure in local docking
by Fei » Thu, 2014-06-26 12:24
1
2,760 by rmoretti
Tue, 2014-07-01 09:44
Normal topic Nanobody prediction using ROSIE ?
by esozdemir » Thu, 2019-06-20 11:14
1
1,449 by rmoretti
Mon, 2019-06-24 12:02
Normal topic academic institution domain is not listed
by ruma99 » Tue, 2022-05-24 08:33
1
224 by Sergey
Tue, 2022-05-24 10:45
Normal topic Rosie server stuck??
by David Weis » Sun, 2017-03-05 13:37
1
1,965 by smlewis
Mon, 2017-03-06 08:58
Normal topic Let docking2 jobs list the scores for the input proteins.pdb file
by AdoCbl » Wed, 2015-09-23 12:24
1
2,372 by AdoCbl
Thu, 2015-09-24 11:38
Normal topic Deleting ones "own" guest job a to reduce server load
by Protein fan » Thu, 2017-10-26 01:26
1
1,896 by rmoretti
Fri, 2017-12-01 11:24
Normal topic SNUGDOCK
by harsh » Tue, 2018-10-09 23:58
1
1,636 by Sergey
Tue, 2018-10-16 15:52
Normal topic ROSIE antibody modeling- discontinuity in backbone
by wagnerek » Tue, 2015-10-27 10:18
1
2,366 by rmoretti
Wed, 2015-11-25 12:53
Normal topic SnugDocking result interpretation
by jessye » Mon, 2019-05-27 03:43
1
1,388 by jeliazkov
Tue, 2019-05-28 13:36
Normal topic missing residues while Rosie Modeling
by jguan » Mon, 2014-08-11 06:56
1
3,935 by jadolfbr
Tue, 2014-10-21 08:46
Normal topic Support for local install of ROSIE?
by jjv5 » Mon, 2022-03-21 08:58
1
272 by Sergey
Mon, 2022-03-21 12:10
Normal topic FARFAR2 structure prediction give a circular RNA
by jitz » Thu, 2019-07-25 04:58
1
1,460 by everyday847
Mon, 2019-11-11 14:39
Normal topic Prepack step fail in docking2
by gretahultqvist » Thu, 2015-06-11 00:20
1
2,731 by rmoretti
Fri, 2015-07-03 12:14
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:46
1
1,679 by rmoretti
Mon, 2017-07-17 07:57
Normal topic Beta-Peptide Design Protocol now available for academic users
by Sergey » Wed, 2012-11-28 12:32
1
6,307 by jaw315
Thu, 2022-06-09 10:26
Normal topic SnugDock: chain_id H represents more than one chain
by tweetman » Wed, 2018-05-02 04:24
1
1,872 by sheehajh
Wed, 2018-05-02 06:38
Normal topic Snugdock versus Docking with an ensemble of protein conformations
by MIke Kent » Fri, 2019-03-29 10:07
1
1,441 by jeliazkov
Fri, 2019-03-29 10:34
Normal topic Docking two proteins with interfacing ligand
by luisalles » Tue, 2016-04-05 23:56
1
2,316 by rmoretti
Fri, 2016-04-29 09:27
Normal topic Academic Email
by Teo » Tue, 2022-09-06 08:42
1
92 by Sergey
Tue, 2022-09-06 11:10
Normal topic farfar2 error
by debostuti » Thu, 2021-10-07 23:10
1
491 by everyday847
Fri, 2021-10-08 10:29
Normal topic Rosie vip function fails on multiple tries
by Amy F » Sat, 2019-06-15 12:51
1
1,286 by rmoretti
Mon, 2019-06-24 12:20
Normal topic Rosetta Antibody
by Maryam_tabasinezhad » Sun, 2016-08-28 00:29
1
2,226 by smlewis
Sun, 2016-08-28 12:04
Normal topic Error of non standard amino acid (SnugDock)
by bt13d072 » Wed, 2017-03-01 19:51
1
2,285 by rmoretti
Mon, 2017-03-06 09:14
Normal topic Academic domain not listed
by SKlab » Fri, 2022-05-20 12:03
1
205 by Sergey
Fri, 2022-05-20 12:14
Normal topic Antibody scoring
by larae » Wed, 2022-06-22 11:14
1
189 by rmoretti
Wed, 2022-06-22 12:00
Normal topic Compaing interface socre of different ligands with the same protein structure
by Caulobacter » Tue, 2019-12-10 12:53
1
1,219 by rmoretti
Tue, 2019-12-10 13:10
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