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ROSIE - General

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Sticky topic Sticky: ROSIE FAQ
by Sergey » Mon, 2013-04-08 10:41
7
31,438 by rmoretti
Thu, 2024-06-20 11:15
Normal topic Ways to improve ROSIE symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 13:39
4
6,520 by IAndre
Tue, 2015-09-29 08:10
Normal topic Ways to improve ROSIE docking2 jobs
by AdoCbl » Wed, 2015-09-23 15:12
0
1,893 by AdoCbl
Wed, 2015-09-23 15:12
Normal topic Ways to improve both docking2 and symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 14:43
0
2,037 by AdoCbl
Wed, 2015-09-23 15:35
Normal topic verified academic email address
by yang » Wed, 2022-12-07 23:36
2
1,539 by ramezani1991
Sat, 2023-02-04 06:02
Normal topic Verification via github
by Mirosh » Wed, 2023-08-30 21:15
1
517 by rmoretti
Thu, 2023-08-31 08:50
Normal topic Verification of Academic Email
by jade » Thu, 2024-06-06 05:23
1
154 by Sergey
Sun, 2024-06-09 11:19
Normal topic Verification
by davelansing » Wed, 2023-07-05 12:09
0
375 by davelansing
Wed, 2023-07-05 12:10
Normal topic Transitioning from ROSIE to Rosetta
by AdoCbl » Wed, 2015-09-23 11:49
0
1,955 by AdoCbl
Wed, 2015-09-23 11:49
Normal topic Symmetric Docking Protocol
by Sergey » Tue, 2013-10-29 17:33
0
5,700 by Sergey
Mon, 2014-04-21 06:48
Normal topic Symmetric Docking Jobs not running
by Flaviyan » Wed, 2014-02-05 06:41
2
6,250 by AdoCbl
Sat, 2015-08-08 22:38
Normal topic Support for local install of ROSIE?
by jjv5 » Mon, 2022-03-21 08:58
1
995 by Sergey
Mon, 2022-03-21 12:10
Normal topic Supercharge server
by alva » Wed, 2014-07-02 17:36
2
4,791 by hooria
Mon, 2016-06-13 11:08
Normal topic supercharge problems
by hooria » Tue, 2016-06-14 05:29
2
3,791 by smlewis
Wed, 2016-06-15 07:50
Normal topic Stepwise error
by debostuti » Wed, 2021-10-06 08:57
3
1,741 by aberrant
Wed, 2024-03-20 02:11
Normal topic SnugDocking result interpretation
by jessye » Mon, 2019-05-27 03:43
1
2,128 by jeliazkov
Tue, 2019-05-28 13:36
Normal topic SnugDock: chain_id H represents more than one chain
by tweetman » Wed, 2018-05-02 04:24
1
2,965 by sheehajh
Wed, 2018-05-02 06:38
Normal topic Snugdock versus Docking with an ensemble of protein conformations
by MIke Kent » Fri, 2019-03-29 10:07
1
2,177 by jeliazkov
Fri, 2019-03-29 10:34
Normal topic Snugdock
by MIke Kent » Mon, 2019-12-16 22:10
4
4,640 by MIke Kent
Tue, 2019-12-24 08:02
Normal topic SNUGDOCK
by harsh » Tue, 2018-10-09 23:58
1
2,362 by Sergey
Tue, 2018-10-16 15:52
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:46
1
2,335 by rmoretti
Mon, 2017-07-17 07:57
Normal topic Small molecule ligand docking in RosettaDock-4.0
by hicks139 » Thu, 2023-03-02 09:35
1
904 by rmoretti
Thu, 2023-03-02 09:37
Normal topic sequence_tolerance queue stuck
by Fred Muskett » Fri, 2021-09-03 08:08
2
1,668 by line
Fri, 2022-02-25 00:40
Normal topic Sequence Tolerance Failed
by Dstork » Tue, 2017-01-03 07:13
6
6,988 by Sergey
Mon, 2017-01-09 16:37
Normal topic Sequence Tolerance broken links?
by dnamkr » Fri, 2021-10-22 11:34
0
852 by dnamkr
Fri, 2021-10-22 11:34
Normal topic Score and I_sc in ROSIE symmetric_docking output
by AdoCbl » Sun, 2015-08-09 00:26
11
14,677 by rmoretti
Tue, 2015-11-24 16:33
Normal topic Running ROSIE from terminal
by sc19 » Thu, 2022-07-14 01:09
0
630 by sc19
Thu, 2022-07-14 01:09
Normal topic Rosie vip function fails on multiple tries
by Amy F » Sat, 2019-06-15 12:51
1
2,015 by rmoretti
Mon, 2019-06-24 12:20
Normal topic Rosie server stuck??
by David Weis » Sun, 2017-03-05 13:37
1
2,603 by smlewis
Mon, 2017-03-06 08:58
Normal topic Rosie Server Docking2, wrong plots output?
by Conan » Tue, 2015-04-21 12:18
6
9,228 by AdoCbl
Sun, 2015-08-09 14:38
Normal topic ROSIE Queue not loading
by ramon-arg » Mon, 2023-07-31 10:09
1
552 by Sergey
Mon, 2023-07-31 11:45
Normal topic ROSIE pKa calculation issue
by lijum » Mon, 2020-06-15 12:12
0
1,401 by lijum
Mon, 2020-06-15 12:12
Normal topic Rosie login email verification
by dominiksIZI » Tue, 2023-02-21 06:10
1
749 by Sergey
Tue, 2023-02-21 09:44
Normal topic Rosie Login
by Chrisjames » Thu, 2024-05-23 10:28
3
391 by Sergey
Tue, 2024-05-28 11:40
Normal topic rosie github log in
by sperrrinpi » Wed, 2023-04-19 06:16
2
868 by sperrrinpi
Thu, 2023-04-20 06:38
Normal topic Rosie GitHub Authentication
by ethandsmith » Fri, 2022-12-09 07:38
2
1,419 by ethandsmith
Sat, 2022-12-10 07:23
Normal topic Rosie Docking Server-Energy function
by jsv » Fri, 2017-07-21 08:26
1
2,464 by ssrb
Fri, 2017-07-21 09:29
Normal topic ROSIE antibody modeling- discontinuity in backbone
by wagnerek » Tue, 2015-10-27 10:18
1
2,944 by rmoretti
Wed, 2015-11-25 12:53
Normal topic ROSIE ANTIBODY GRAFTING
by izzafajriani » Sat, 2023-02-25 01:28
0
613 by izzafajriani
Sat, 2023-02-25 01:28
Normal topic ROSIE academic email verification
by Yang Xie » Fri, 2022-09-23 06:37
4
1,656 by Yang Xie
Fri, 2022-09-23 10:09
Normal topic RosettaDock output
by taeyoungahn » Wed, 2022-11-23 17:04
2
1,491 by taeyoungahn
Sun, 2022-11-27 20:12
Normal topic Rosettadock Error
by jinfeng » Fri, 2022-11-18 20:39
0
895 by jinfeng
Fri, 2022-11-18 20:39
Normal topic Rosetta-Vienna RNP-ddG failed
by Athena Chu » Mon, 2022-04-18 18:21
0
694 by Athena Chu
Mon, 2022-04-18 18:21
Normal topic Rosetta processes crashed
by izzafajriani » Thu, 2023-02-23 15:35
0
654 by izzafajriani
Thu, 2023-02-23 15:35
Normal topic ROSETTA design affinity optimization
by wentlewi » Mon, 2020-02-03 01:42
0
1,778 by wentlewi
Mon, 2020-02-03 01:42
Normal topic Rosetta Antibody
by Maryam_tabasinezhad » Sun, 2016-08-28 00:29
1
2,881 by smlewis
Sun, 2016-08-28 12:04
Normal topic RMSD values in docking2 and symmetric_docking runs
by AdoCbl » Sun, 2015-08-09 00:48
4
7,232 by rmoretti
Fri, 2015-09-04 13:57
Normal topic RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs
by AdoCbl » Sun, 2015-10-18 12:49
1
2,963 by IAndre
Mon, 2015-10-19 01:19
Normal topic RMSD - Score
by LT » Thu, 2017-02-23 12:59
1
2,852 by rmoretti
Thu, 2017-02-23 13:03
Normal topic RMSD
by jessye » Tue, 2019-07-02 01:54
1
2,813 by rmoretti
Tue, 2019-07-09 09:49
Normal topic Results are NOT emailed
by alsayeghkn » Wed, 2022-03-23 08:55
0
662 by alsayeghkn
Wed, 2022-03-23 08:55
Normal topic Relax application before ROSIE
by mwinn99 » Wed, 2022-05-25 13:23
0
696 by mwinn99
Wed, 2022-05-25 13:23
Normal topic Regarding snugdock Ag-Ab score
by ss » Mon, 2018-12-10 14:47
7
6,916 by ss
Thu, 2019-01-03 09:08
Normal topic Questions about SnugDock result analysis
by LTJ » Thu, 2020-07-02 17:41
0
1,453 by LTJ
Thu, 2020-07-02 17:41
Normal topic proteins.pdb: Not enough chains in submitted protein! [At least 2 chains should be present, found chains: [u'A']...]
by Loki01 » Mon, 2018-03-19 13:34
2
3,282 by Loki01
Mon, 2018-03-19 13:45
Normal topic Protein protein docking
by drrahulsuresh » Wed, 2018-05-02 12:52
1
2,565 by smlewis
Thu, 2018-05-03 11:45
Normal topic Problems with the RNA Denovo server
by mariaclausen » Tue, 2014-11-25 01:45
2
4,176 by mariaclausen
Thu, 2014-11-27 01:30
Normal topic problems with docking
by msironi » Thu, 2016-10-27 00:46
3
4,488 by Sergey
Mon, 2016-11-21 11:03
Normal topic Problem with ROSIE antibody modeling
by wildchipiron » Thu, 2016-04-14 20:00
0
1,993 by wildchipiron
Thu, 2016-04-14 20:00
Normal topic Problem in refinement job in Docking2
by aninditaseal » Fri, 2016-04-22 07:12
1
2,676 by Sergey
Fri, 2016-04-22 11:13
Normal topic problem in downloading result from backrub server
by ladimafakher » Sun, 2018-07-01 00:50
0
1,457 by ladimafakher
Sun, 2018-07-01 00:50
Normal topic Prepack step fail in docking2
by gretahultqvist » Thu, 2015-06-11 00:20
1
3,340 by rmoretti
Fri, 2015-07-03 12:14
Normal topic Please add academic email
by mglgc » Tue, 2024-04-23 10:24
1
241 by Sergey
Tue, 2024-04-23 12:00
Normal topic pKa job submitting problem
by syoifczeri » Tue, 2015-02-17 21:41
2
4,112 by syoifczeri
Wed, 2015-02-18 19:15
Normal topic pKa app is now public!
by Sergey » Mon, 2014-03-10 15:47
0
3,893 by Sergey
Mon, 2014-03-10 15:47
Normal topic peptiderive problem
by Fatemeh Arabi » Fri, 2016-10-14 02:54
3
4,490 by Sergey
Mon, 2016-11-14 14:48
Normal topic peptide design
by Miriam Gulman » Wed, 2023-10-25 00:09
3
832 by rmoretti
Mon, 2023-10-30 07:21
Normal topic Output format
by Michele Tavanti » Sat, 2015-04-25 05:03
2
3,967 by Conan
Sat, 2015-04-25 11:31
Normal topic Numbering failed
by Sbrendle » Mon, 2017-06-05 08:07
3
4,512 by rmoretti
Thu, 2017-06-29 07:58
Normal topic Nanobody prediction using ROSIE ?
by esozdemir » Thu, 2019-06-20 11:14
1
2,305 by rmoretti
Mon, 2019-06-24 12:02
Normal topic my status jobs been queued in such longer time
by Atirah » Fri, 2020-04-10 02:55
0
1,673 by Atirah
Fri, 2020-04-10 02:57
Normal topic My academic institution domain is not listed.
by mebigi » Fri, 2022-04-08 07:44
2
1,315 by mebigi
Mon, 2022-04-11 16:35
Normal topic Multiple antibody jobs failed
by larae » Mon, 2022-09-12 09:54
0
632 by larae
Mon, 2022-09-12 09:54
Normal topic Modeling Antibody Structure failed
by Sunyp_IM » Sun, 2017-08-06 02:59
1
2,708 by rmoretti
Mon, 2017-08-14 15:09
Normal topic missing residues while Rosie Modeling
by jguan » Mon, 2014-08-11 06:56
1
4,566 by jadolfbr
Tue, 2014-10-21 08:46
Normal topic m6A modification on FARFAR2
by uke » Mon, 2023-09-18 04:31
0
552 by uke
Mon, 2023-09-18 04:31
Normal topic Login using GitHub
by nicotomasini » Mon, 2023-01-30 09:14
1
812 by Sergey
Mon, 2023-01-30 12:32
Normal topic Log in to rosie
by dnamkr » Tue, 2022-03-15 11:04
1
1,110 by Sergey
Tue, 2022-03-15 11:28
Normal topic Linear peptide versus cyclic peptide binding prediction
by gabr » Mon, 2019-11-18 12:25
2
3,479 by gabr
Tue, 2019-11-19 13:57
Normal topic Ligand docking score.sc file containing more structures than produced
by Delfosse57 » Sat, 2022-07-16 10:44
2
1,250 by Delfosse57
Mon, 2022-07-18 11:09
Normal topic Ligand Docking Protocol now available for academic users
by Sergey » Sat, 2014-05-10 14:39
0
2,448 by Sergey
Sat, 2014-05-10 14:39
Normal topic Ligand docking error Could not find essential file trigger-00001.ligand_docking_protocol
by iphan » Mon, 2016-09-12 10:58
4
6,176 by rmoretti
Mon, 2016-10-03 10:44
Normal topic Ligand Binding
by KS Siddiqui » Thu, 2019-04-25 01:01
0
1,453 by KS Siddiqui
Thu, 2019-04-25 01:01
Normal topic LIGAND APPEARS TO BE DOCKED INTO EMPTY SPACE
by gabeliluo1 » Wed, 2016-01-06 16:23
5
7,206 by rmoretti
Thu, 2016-02-04 07:39
Normal topic Let docking2 jobs list the scores for the input proteins.pdb file
by AdoCbl » Wed, 2015-09-23 12:24
1
2,932 by AdoCbl
Thu, 2015-09-24 11:38
Normal topic Job 「№15623」has failed
by fglaser » Tue, 2015-07-07 00:17
3
5,863 by rmoretti
Tue, 2015-07-14 14:35
Normal topic Is there a limitation of RNA length using farfar2?
by lwb » Wed, 2023-01-04 19:09
1
971 by everyday847
Wed, 2023-01-04 19:20
Normal topic Institute for academic email recognition
by CeciliaGG » Tue, 2024-03-26 05:40
1
302 by rmoretti
Mon, 2024-04-29 10:10
Normal topic I have jobs queued for nearly 1 month
by jessye » Thu, 2019-10-10 03:36
0
1,528 by jessye
Thu, 2019-10-10 03:36
Normal topic How to run PLOT LHOC on Results from Rosie Server
by sujigeorge1979 » Mon, 2019-06-10 19:32
3
3,533 by jeliazkov
Mon, 2019-06-24 11:49
Normal topic How to improve ROSIE docking2 results?
by AdoCbl » Sun, 2015-08-09 01:22
2
4,355 by AdoCbl
Tue, 2015-08-18 19:19
Normal topic How to change your ROSIE username or password?
by AdoCbl » Sun, 2015-08-09 00:08
2
4,258 by AdoCbl
Tue, 2015-08-18 19:09
Normal topic how can i refine protein loop region contain nonstandard amino acid morespecifically Phosphoserine and phosphothreonine
by jai_INMAS » Thu, 2014-08-07 01:49
6
11,257 by jai_INMAS
Fri, 2014-08-15 08:02
Normal topic GitHub authentication for Rosie
by ivmolle » Thu, 2023-01-19 00:21
1
763 by Sergey
Thu, 2023-01-19 13:33
Normal topic getting right protonation state from PKa of Rosie
by hajar » Fri, 2020-07-24 16:24
0
1,300 by hajar
Fri, 2020-07-24 16:24
Normal topic Fv modelling Job Mab_Top 「№33253」
by pr.henriques » Wed, 2017-07-12 03:13
3
4,246 by rmoretti
Thu, 2017-07-13 15:19
Normal topic free Energy Calculation?
by Sduenas » Thu, 2015-06-25 12:18
1
4,459 by rmoretti
Fri, 2015-07-03 11:56
Normal topic Fnat=NaN in a docking2 job
by AdoCbl » Sun, 2015-10-18 12:19
2
4,340 by AdoCbl
Sun, 2015-10-18 15:52
Normal topic FARFAR2 structure prediction give a circular RNA
by jitz » Thu, 2019-07-25 04:58
1
2,302 by everyday847
Mon, 2019-11-11 14:39
Normal topic farfar2 not submitting jobs
by santos » Thu, 2023-03-02 05:07
1
839 by everyday847
Thu, 2023-03-02 07:51
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