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ROSIE - General

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Sticky topic Sticky: ROSIE FAQ
by Sergey » Mon, 2013-04-08 10:41
6
27,101 by G-Jade
Fri, 2020-12-18 22:40
Normal topic Academic domain not listed
by SKlab » Fri, 2022-05-20 12:03
1
9 by Sergey
Fri, 2022-05-20 12:14
Normal topic academic institution domain is not listed
by minzhi » Mon, 2022-05-16 14:26
1
23 by Sergey
Wed, 2022-05-18 14:05
Normal topic Rosetta-Vienna RNP-ddG failed
by Athena Chu » Mon, 2022-04-18 18:21
0
51 by Athena Chu
Mon, 2022-04-18 18:21
Normal topic Correctly Formatting a PDB file for analysis of a Zinc Finger Motif
by rslack » Thu, 2022-04-28 18:19
0
63 by rslack
Thu, 2022-04-28 18:38
Normal topic Results are NOT emailed
by alsayeghkn » Wed, 2022-03-23 08:55
0
64 by alsayeghkn
Wed, 2022-03-23 08:55
Normal topic Antibody job failed
by larae » Fri, 2022-03-25 11:04
1
81 by rmoretti
Tue, 2022-03-29 15:14
Normal topic Cannot login ROSIE-2 (docking-3)
by Pdk089 » Mon, 2022-04-25 11:30
1
85 by Sergey
Mon, 2022-04-25 11:48
Normal topic Academic domain missing
by yoann.vial » Wed, 2022-04-13 00:20
2
87 by Sergey
Fri, 2022-04-15 10:20
Normal topic Support for local install of ROSIE?
by jjv5 » Mon, 2022-03-21 08:58
1
102 by Sergey
Mon, 2022-03-21 12:10
Normal topic Academic domain not listed
by larae » Mon, 2022-05-02 02:50
4
106 by SKlab
Mon, 2022-05-16 09:12
Normal topic My academic institution domain is not listed.
by mebigi » Fri, 2022-04-08 07:44
2
124 by mebigi
Mon, 2022-04-11 16:35
Normal topic Log in to rosie
by dnamkr » Tue, 2022-03-15 11:04
1
140 by Sergey
Tue, 2022-03-15 11:28
Normal topic ddG_RNA final energy different when modeling WT sequence
by AlexLukasiewicz » Tue, 2022-01-25 14:41
0
184 by AlexLukasiewicz
Tue, 2022-01-25 14:41
Normal topic Sequence Tolerance broken links?
by dnamkr » Fri, 2021-10-22 11:34
0
250 by dnamkr
Fri, 2021-10-22 11:34
Normal topic Stepwise error
by debostuti » Wed, 2021-10-06 08:57
2
304 by debostuti
Fri, 2021-10-08 00:29
Normal topic farfar2 error
by debostuti » Thu, 2021-10-07 23:10
1
307 by everyday847
Fri, 2021-10-08 10:29
Normal topic sequence_tolerance queue stuck
by Fred Muskett » Fri, 2021-09-03 08:08
2
428 by line
Fri, 2022-02-25 00:40
Normal topic getting right protonation state from PKa of Rosie
by hajar » Fri, 2020-07-24 16:24
0
636 by hajar
Fri, 2020-07-24 16:24
Normal topic ROSIE pKa calculation issue
by lijum » Mon, 2020-06-15 12:12
0
742 by lijum
Mon, 2020-06-15 12:12
Normal topic Questions about SnugDock result analysis
by LTJ » Thu, 2020-07-02 17:41
0
764 by LTJ
Thu, 2020-07-02 17:41
Normal topic Ligand Binding
by KS Siddiqui » Thu, 2019-04-25 01:01
0
865 by KS Siddiqui
Thu, 2019-04-25 01:01
Normal topic I have jobs queued for nearly 1 month
by jessye » Thu, 2019-10-10 03:36
0
879 by jessye
Thu, 2019-10-10 03:36
Normal topic problem in downloading result from backrub server
by ladimafakher » Sun, 2018-07-01 00:50
0
899 by ladimafakher
Sun, 2018-07-01 00:50
Normal topic Antibody Job Failed
by aquilesms89 » Thu, 2020-08-13 08:50
0
926 by aquilesms89
Thu, 2020-08-13 08:50
Normal topic ROSETTA design affinity optimization
by wentlewi » Mon, 2020-02-03 01:42
0
946 by wentlewi
Mon, 2020-02-03 01:42
Normal topic my status jobs been queued in such longer time
by Atirah » Fri, 2020-04-10 02:55
0
1,005 by Atirah
Fri, 2020-04-10 02:57
Normal topic Compaing interface socre of different ligands with the same protein structure
by Caulobacter » Tue, 2019-12-10 12:53
1
1,057 by rmoretti
Tue, 2019-12-10 13:10
Normal topic antibody-antigen interface score
by jessye » Sun, 2018-07-01 21:12
0
1,112 by jessye
Sun, 2018-07-01 21:12
Normal topic Rosie vip function fails on multiple tries
by Amy F » Sat, 2019-06-15 12:51
1
1,114 by rmoretti
Mon, 2019-06-24 12:20
Normal topic Bound Ligand Protein-Protein Docking
by ajaniharesh » Mon, 2019-04-08 12:18
1
1,134 by rmoretti
Thu, 2019-05-09 13:38
Normal topic error in peptiderive job result
by PRITAM » Wed, 2019-05-08 09:33
1
1,142 by rmoretti
Mon, 2019-06-24 12:30
Normal topic Docking results
by sujigeorge1979 » Wed, 2019-06-12 23:40
1
1,177 by jeliazkov
Mon, 2019-06-17 06:07
Normal topic SnugDocking result interpretation
by jessye » Mon, 2019-05-27 03:43
1
1,208 by jeliazkov
Tue, 2019-05-28 13:36
Normal topic antibody modeling fail
by jessye » Tue, 2019-07-02 01:57
1
1,223 by rmoretti
Wed, 2019-07-10 09:09
Normal topic Snugdock versus Docking with an ensemble of protein conformations
by MIke Kent » Fri, 2019-03-29 10:07
1
1,270 by jeliazkov
Fri, 2019-03-29 10:34
Normal topic Nanobody prediction using ROSIE ?
by esozdemir » Thu, 2019-06-20 11:14
1
1,273 by rmoretti
Mon, 2019-06-24 12:02
Normal topic FARFAR2 structure prediction give a circular RNA
by jitz » Thu, 2019-07-25 04:58
1
1,292 by everyday847
Mon, 2019-11-11 14:39
Normal topic Ways to improve ROSIE docking2 jobs
by AdoCbl » Wed, 2015-09-23 15:12
0
1,443 by AdoCbl
Wed, 2015-09-23 15:12
Normal topic Transitioning from ROSIE to Rosetta
by AdoCbl » Wed, 2015-09-23 11:49
0
1,451 by AdoCbl
Wed, 2015-09-23 11:49
Normal topic SNUGDOCK
by harsh » Tue, 2018-10-09 23:58
1
1,464 by Sergey
Tue, 2018-10-16 15:52
Normal topic RMSD
by jessye » Tue, 2019-07-02 01:54
1
1,476 by rmoretti
Tue, 2019-07-09 09:49
Normal topic Problem with ROSIE antibody modeling
by wildchipiron » Thu, 2016-04-14 20:00
0
1,478 by wildchipiron
Thu, 2016-04-14 20:00
Normal topic Ways to improve both docking2 and symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 14:43
0
1,486 by AdoCbl
Wed, 2015-09-23 15:35
Normal topic Cancel / delete Rosie not working
by fglaser » Tue, 2015-07-07 01:14
0
1,497 by fglaser
Tue, 2015-07-07 01:14
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:46
1
1,527 by rmoretti
Mon, 2017-07-17 07:57
Normal topic Does Snugdock remodeling of H3 loops include the kink constraint as in RosettaAntibody?
by MIke Kent » Wed, 2019-03-27 10:09
2
1,604 by MIke Kent
Thu, 2019-03-28 11:26
Normal topic Rosie Docking Server-Energy function
by jsv » Fri, 2017-07-21 08:26
1
1,618 by ssrb
Fri, 2017-07-21 09:29
Normal topic FARFAR2 error
by lijunnju » Tue, 2020-02-11 08:09
2
1,622 by Lipgloss
Mon, 2020-04-20 01:56
Normal topic Protein protein docking
by drrahulsuresh » Wed, 2018-05-02 12:52
1
1,625 by smlewis
Thu, 2018-05-03 11:45
Normal topic SnugDock: chain_id H represents more than one chain
by tweetman » Wed, 2018-05-02 04:24
1
1,688 by sheehajh
Wed, 2018-05-02 06:38
Normal topic Deleting ones "own" guest job a to reduce server load
by Protein fan » Thu, 2017-10-26 01:26
1
1,736 by rmoretti
Fri, 2017-12-01 11:24
Normal topic Comparing Protein-Protein Docking interactions between WT and mutant proteins
by dflaher » Fri, 2017-11-03 06:18
1
1,798 by rmoretti
Fri, 2017-12-01 11:21
Normal topic Rosie server stuck??
by David Weis » Sun, 2017-03-05 13:37
1
1,800 by smlewis
Mon, 2017-03-06 08:58
Normal topic Modeling Antibody Structure failed
by Sunyp_IM » Sun, 2017-08-06 02:59
1
1,832 by rmoretti
Mon, 2017-08-14 15:09
Normal topic Erraser single-residue protocol now open to public
by Sergey » Thu, 2012-10-25 18:21
0
1,866 by Sergey
Mon, 2014-04-21 06:47
Normal topic chothia numbering error of FR_L1
by Sbrendle » Mon, 2016-08-22 06:58
1
1,892 by nmarze
Mon, 2016-08-22 11:57
Normal topic Erraser protocol now open to public
by Sergey » Wed, 2012-10-17 12:38
0
1,902 by Sergey
Mon, 2014-04-21 06:47
Normal topic Linear peptide versus cyclic peptide binding prediction
by gabr » Mon, 2019-11-18 12:25
2
1,906 by gabr
Tue, 2019-11-19 13:57
Normal topic Problem in refinement job in Docking2
by aninditaseal » Fri, 2016-04-22 07:12
1
1,918 by Sergey
Fri, 2016-04-22 11:13
Normal topic How to run PLOT LHOC on Results from Rosie Server
by sujigeorge1979 » Mon, 2019-06-10 19:32
3
1,966 by jeliazkov
Mon, 2019-06-24 11:49
Normal topic Ligand Docking Protocol now available for academic users
by Sergey » Sat, 2014-05-10 14:39
0
1,970 by Sergey
Sat, 2014-05-10 14:39
Normal topic RMSD - Score
by LT » Thu, 2017-02-23 12:59
1
1,999 by rmoretti
Thu, 2017-02-23 13:03
Normal topic Rosetta Antibody
by Maryam_tabasinezhad » Sun, 2016-08-28 00:29
1
2,039 by smlewis
Sun, 2016-08-28 12:04
Normal topic Error of non standard amino acid (SnugDock)
by bt13d072 » Wed, 2017-03-01 19:51
1
2,125 by rmoretti
Mon, 2017-03-06 09:14
Normal topic Docking two proteins with interfacing ligand
by luisalles » Tue, 2016-04-05 23:56
1
2,139 by rmoretti
Fri, 2016-04-29 09:27
Normal topic proteins.pdb: Not enough chains in submitted protein! [At least 2 chains should be present, found chains: [u'A']...]
by Loki01 » Mon, 2018-03-19 13:34
2
2,140 by Loki01
Mon, 2018-03-19 13:45
Normal topic ROSIE antibody modeling- discontinuity in backbone
by wagnerek » Tue, 2015-10-27 10:18
1
2,218 by rmoretti
Wed, 2015-11-25 12:53
Normal topic Let docking2 jobs list the scores for the input proteins.pdb file
by AdoCbl » Wed, 2015-09-23 12:24
1
2,225 by AdoCbl
Thu, 2015-09-24 11:38
Normal topic "in_progress" decoy files in some docking2 local_docking job tar archives
by AdoCbl » Sun, 2015-10-18 13:47
1
2,226 by rmoretti
Sun, 2015-10-18 13:59
Normal topic RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs
by AdoCbl » Sun, 2015-10-18 12:49
1
2,233 by IAndre
Mon, 2015-10-19 01:19
Normal topic Snugdock
by MIke Kent » Mon, 2019-12-16 22:10
4
2,525 by MIke Kent
Tue, 2019-12-24 08:02
Normal topic Prepack step fail in docking2
by gretahultqvist » Thu, 2015-06-11 00:20
1
2,601 by rmoretti
Fri, 2015-07-03 12:14
Normal topic Failure in local docking
by Fei » Thu, 2014-06-26 12:24
1
2,629 by rmoretti
Tue, 2014-07-01 09:44
Normal topic Docking-Error 500
by edebenedictis » Wed, 2016-08-03 12:34
2
2,662 by Sergey
Wed, 2016-08-03 14:21
Normal topic supercharge problems
by hooria » Tue, 2016-06-14 05:29
2
2,771 by smlewis
Wed, 2016-06-15 07:50
Normal topic CDR are not being recognized
by wildchipiron » Mon, 2016-05-23 15:03
2
2,773 by nmarze
Wed, 2016-05-25 14:54
Normal topic Fv modelling Job Mab_Top 「№33253」
by pr.henriques » Wed, 2017-07-12 03:13
3
2,840 by rmoretti
Thu, 2017-07-13 15:19
Normal topic download decoy structures as .tar file?
by deplazes » Fri, 2014-11-21 19:25
1
2,864 by Ashafix
Sat, 2014-11-29 07:00
Normal topic docking2: will the real prepacked PDB stand up?
by David Weis » Tue, 2017-02-21 10:04
3
2,894 by rmoretti
Tue, 2017-02-28 08:34
Normal topic Output format
by Michele Tavanti » Sat, 2015-04-25 05:03
2
3,018 by Conan
Sat, 2015-04-25 11:31
Normal topic Antibody prediction with ROSIE failed
by Sunyp_IM » Wed, 2017-08-02 23:45
4
3,022 by Sergey
Thu, 2019-05-09 08:15
Normal topic Numbering failed
by Sbrendle » Mon, 2017-06-05 08:07
3
3,104 by rmoretti
Thu, 2017-06-29 07:58
Normal topic free Energy Calculation?
by Sduenas » Thu, 2015-06-25 12:18
1
3,153 by rmoretti
Fri, 2015-07-03 11:56
Normal topic peptiderive problem
by Fatemeh Arabi » Fri, 2016-10-14 02:54
3
3,185 by Sergey
Mon, 2016-11-14 14:48
Normal topic pKa job submitting problem
by syoifczeri » Tue, 2015-02-17 21:41
2
3,186 by syoifczeri
Wed, 2015-02-18 19:15
Normal topic problems with docking
by msironi » Thu, 2016-10-27 00:46
3
3,231 by Sergey
Mon, 2016-11-21 11:03
Normal topic Problems with the RNA Denovo server
by mariaclausen » Tue, 2014-11-25 01:45
2
3,272 by mariaclausen
Thu, 2014-11-27 01:30
Normal topic Fnat=NaN in a docking2 job
by AdoCbl » Sun, 2015-10-18 12:19
2
3,272 by AdoCbl
Sun, 2015-10-18 15:52
Normal topic How to change your ROSIE username or password?
by AdoCbl » Sun, 2015-08-09 00:08
2
3,282 by AdoCbl
Tue, 2015-08-18 19:09
Normal topic How to improve ROSIE docking2 results?
by AdoCbl » Sun, 2015-08-09 01:22
2
3,295 by AdoCbl
Tue, 2015-08-18 19:19
Normal topic Error 500 Docking protein
by Sherpaman » Tue, 2014-05-27 01:32
2
3,349 by Sergey
Wed, 2014-05-28 13:16
Normal topic Docking2: Mismatch between score file and graph
by Ashafix » Sat, 2014-11-29 07:44
2
3,371 by AdoCbl
Sun, 2015-08-09 14:37
Normal topic pKa app is now public!
by Sergey » Mon, 2014-03-10 15:47
0
3,380 by Sergey
Mon, 2014-03-10 15:47
Normal topic Supercharge server
by alva » Wed, 2014-07-02 17:36
2
3,649 by hooria
Mon, 2016-06-13 11:08
Normal topic missing residues while Rosie Modeling
by jguan » Mon, 2014-08-11 06:56
1
3,794 by jadolfbr
Tue, 2014-10-21 08:46
Normal topic Can you change background color of pdb file pictures?
by AdoCbl » Sun, 2015-08-09 01:47
3
4,120 by AdoCbl
Tue, 2015-08-18 19:17
Normal topic Regarding snugdock Ag-Ab score
by ss » Mon, 2018-12-10 14:47
7
4,201 by ss
Thu, 2019-01-03 09:08
Normal topic docking2: local_docking vs docking_local_refine
by AdoCbl » Sat, 2015-08-08 23:57
3
4,304 by AdoCbl
Wed, 2015-08-26 19:44
Normal topic Job 「№15623」has failed
by fglaser » Tue, 2015-07-07 00:17
3
4,524 by rmoretti
Tue, 2015-07-14 14:35
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