| BB_Pos typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| calc_dotscore(Real const dpall) const | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| calc_phithetascore(Real const phi, Real const theta) const | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| calc_rsigmascore(Real sig, Real dist, Size const sign1, Size const sign2) const | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| DimerPairings typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| dotscore_ | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| FArray1D_int typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| FArray1D_real typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| FArray4D_real typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| load_dotscore_bins() | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| load_phi_theta_bins(String const &ss_filename="scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth") | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| NatbiasStrandPairPotential() | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| NatbiasStrandPairPotential(StrandPairingSetOP const spairset) | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| native_spairset_ | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| pair_dp(Size const &ss1, Size const &ss2, BB_Pos const &bb_pos, Real &dp, Vector const &mid_vector, Size &sign1, Size &sign2) const | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| phithetascore_ | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| Pose typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| Real typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| rsigma_dot_ | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| rsigma_dot_initializer(FArray4D_real &rsigma_dot) | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | privatestatic |
| score(Pose const &pose, SS_Info2 const &ss_info, Real &ss_score) const | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| set_native_spairset(StrandPairingSetOP const spairset) | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| Size typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| SS_Info2 typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| strand_dist_cutoff_ | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | private |
| StrandPairingSetCOP typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| StrandPairingSetOP typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| String typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| Vector typedef | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | |
| ~NatbiasStrandPairPotential() | protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential | virtual |
1.8.7