core::scoring::rna::data::RNA_DMS_Potential Member List

This is the complete list of members for core::scoring::rna::data::RNA_DMS_Potential, including all inherited members.

add_probe_to_pose(pose::Pose &pose)	core::scoring::rna::data::RNA_DMS_Potential	private
binding_energy_values_	core::scoring::rna::data::RNA_DMS_Potential	private
check_chbonded(pose::Pose const &pose, Size const &i, std::string const &atom_name) const	core::scoring::rna::data::RNA_DMS_Potential
check_hbonded(pose::Pose const &pose, Size const &i, std::string const &atom_name, bool is_acceptor) const	core::scoring::rna::data::RNA_DMS_Potential
DMS_potential_	core::scoring::rna::data::RNA_DMS_Potential	private
DMS_potential_binding_energy_	core::scoring::rna::data::RNA_DMS_Potential	private
DMS_potential_is_bonded_	core::scoring::rna::data::RNA_DMS_Potential	private
DMS_potential_occ_	core::scoring::rna::data::RNA_DMS_Potential	private
DMS_stats_	core::scoring::rna::data::RNA_DMS_Potential	private
DMS_values() const	core::scoring::rna::data::RNA_DMS_Potential	inline
DMS_values_	core::scoring::rna::data::RNA_DMS_Potential	private
evaluate(core::pose::Pose const &pose, RNA_Reactivity const &rna_reactivity)	core::scoring::rna::data::RNA_DMS_Potential
figure_out_potential()	core::scoring::rna::data::RNA_DMS_Potential	private
get_binding_energy(Size const i, core::Vector const &probe_xyz, core::scoring::ScoreFunction const &scorefxn)	core::scoring::rna::data::RNA_DMS_Potential
get_features(pose::Pose const &pose, Size const i, bool &ade_n1_bonded, Real &binding_energy, Real &occupancy_density)	core::scoring::rna::data::RNA_DMS_Potential	private
get_logL_values(pose::Pose const &pose, Size const i)	core::scoring::rna::data::RNA_DMS_Potential
get_N1_lonepair_donor_angle(core::conformation::Residue const &acc_rsd, core::conformation::Residue const &don_rsd, Size const don_h_atm) const	core::scoring::rna::data::RNA_DMS_Potential
get_occupancy_densities(utility::vector1< Real > &occupancy_densities, pose::Pose const &pose, Size const i, core::Vector const &probe_xyz, utility::vector1< Distance > const &shells) const	core::scoring::rna::data::RNA_DMS_Potential
get_occupancy_density(pose::Pose const &pose, Size const i, core::Vector const &probe_xyz, std::pair< Distance, Distance > const &shells) const	core::scoring::rna::data::RNA_DMS_Potential
get_probe_scorefxn(bool const soft_rep, bool const just_atr_rep) const	core::scoring::rna::data::RNA_DMS_Potential
get_probe_xyz(core::conformation::Residue const &rsd, Distance const probe_dist) const	core::scoring::rna::data::RNA_DMS_Potential
hbond_set_	core::scoring::rna::data::RNA_DMS_Potential	private
initialize(core::pose::Pose const &pose)	core::scoring::rna::data::RNA_DMS_Potential
initialize_DMS_potential()	core::scoring::rna::data::RNA_DMS_Potential	private
is_bonded_values_	core::scoring::rna::data::RNA_DMS_Potential	private
methyl_probe_dist_	core::scoring::rna::data::RNA_DMS_Potential	private
occ_dist_	core::scoring::rna::data::RNA_DMS_Potential	private
occ_shells_	core::scoring::rna::data::RNA_DMS_Potential	private
occ_values_	core::scoring::rna::data::RNA_DMS_Potential	private
oxygen_probe_dist_	core::scoring::rna::data::RNA_DMS_Potential	private
p_DMS_	core::scoring::rna::data::RNA_DMS_Potential	private
p_model_	core::scoring::rna::data::RNA_DMS_Potential	private
probe_scorefxn_	core::scoring::rna::data::RNA_DMS_Potential	private
read_DMS_stats_file(std::string const &potential_file)	core::scoring::rna::data::RNA_DMS_Potential	private
RNA_DMS_Potential()	core::scoring::rna::data::RNA_DMS_Potential
separate_scores_	core::scoring::rna::data::RNA_DMS_Potential	private
update_virtual_base_if_necessary(pose::Pose &pose, Size const i)	core::scoring::rna::data::RNA_DMS_Potential	private
working_pose_	core::scoring::rna::data::RNA_DMS_Potential	private
working_pose_with_probe_	core::scoring::rna::data::RNA_DMS_Potential	private
~RNA_DMS_Potential()	core::scoring::rna::data::RNA_DMS_Potential