apply(core::pose::Pose &pose) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
build_rotamer_list(core::conformation::Residue const &, bool filter, RotamerList &) const | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
change_chi_without_replacing_residue() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
ChiVector typedef | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
clear_info() | protocols::moves::Mover | inlinevirtual |
clone() const | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | virtual |
compute_proposal_density(core::conformation::Residue const &new_residue, core::Size const resnum, core::chemical::ResidueType const &old_res_type, ChiVector const &old_chi) const | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | virtual |
compute_rotdensities(RotamerList const &, ChiVector const &old_chi, ChiVector const &new_chi, core::Real &within_rot_density) const | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
create() | protocols::moves::Mover | virtual |
dof_id_ranges(core::pose::Pose &pose) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
Filters_map typedef | protocols::moves::Mover | |
finalize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::ThermodynamicMover | virtual |
fresh_instance() const | protocols::moves::Mover | virtual |
get_additional_output() | protocols::moves::Mover | virtual |
get_current_job() const | protocols::moves::Mover | |
get_current_tag() const | protocols::moves::Mover | inline |
get_input_pose() const | protocols::moves::Mover | |
get_last_move_status() const | protocols::moves::Mover | |
get_name() const | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | virtual |
get_native_pose() const | protocols::moves::Mover | |
get_self_ptr() const | protocols::moves::Mover | inline |
get_self_ptr() | protocols::moves::Mover | inline |
get_self_weak_ptr() const | protocols::moves::Mover | inline |
get_self_weak_ptr() | protocols::moves::Mover | inline |
get_type() const | protocols::moves::Mover | inline |
have_mutated_residue() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | inlinevirtual |
idealize_sidechains(core::pose::Pose &pose) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
info() | protocols::moves::Mover | inlinevirtual |
info() const | protocols::moves::Mover | inlinevirtual |
init_task(core::pose::Pose const &pose) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
is_multi_trial() | protocols::canonical_sampling::ThermodynamicMover | virtual |
last_inner_score_delta_over_temperature() | protocols::canonical_sampling::ThermodynamicMover | virtual |
last_proposal_density_ratio() | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
make_chi_move(core::conformation::Residue const &residue, ChiVector const &old_chi, ChiVector &new_chi) | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | virtual |
make_move(core::conformation::ResidueOP res) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
metropolis_hastings_mover() | protocols::canonical_sampling::ThermodynamicMover | virtual |
Mover() | protocols::moves::Mover | |
Mover(std::string const &type_name) | protocols::moves::Mover | |
Mover(Mover const &other) | protocols::moves::Mover | |
name() | protocols::moves::Mover | inlinestatic |
observe_after_metropolis(protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::ThermodynamicMover | virtual |
operator=(Mover const &other) | protocols::moves::Mover | |
packed_residues() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
Parent typedef | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose) | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | virtual |
PerturbRotamerSidechainMover() | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
PerturbRotamerSidechainMover(core::pack::dunbrack::RotamerLibrary const &rotamer_library) | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
PerturbRotamerSidechainMover(PerturbRotamerSidechainMover const &mover) | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
Pose typedef | protocols::moves::Mover | |
PoseCOP typedef | protocols::moves::Mover | |
preserve_detailed_balance() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
register_options() | protocols::moves::Mover | inlinestatic |
reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
reset_status() | protocols::moves::Mover | |
residue_packed() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
rotamer_library() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
RotamerList typedef | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
set_change_chi_without_replacing_residue(bool setting) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
set_defaults() | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | protected |
set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
set_metropolis_hastings_mover(protocols::canonical_sampling::MetropolisHastingsMoverAP metropolis_hastings_mover) | protocols::canonical_sampling::ThermodynamicMover | virtual |
set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_preserve_detailed_balance(bool setting) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
set_task(core::pack::task::PackerTaskCOP task) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
set_task_factory(core::pack::task::TaskFactoryCOP task_factory) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
set_temperature(core::Real setting) | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | inline |
set_type(std::string const &setting) | protocols::moves::Mover | inline |
show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
SidechainMoverBase() | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
SidechainMoverBase(core::pack::dunbrack::RotamerLibrary const &rotamer_library) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
SidechainMoverBase(SidechainMoverBase const &mover) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
Strings typedef | protocols::moves::Mover | |
suggest_residue_number(core::pose::Pose const &) const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
TagCOP typedef | protocols::moves::Mover | |
task() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
task_factory() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
temperature() const | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | inline |
temperature_ | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | private |
test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
ThermodynamicMover() | protocols::canonical_sampling::ThermodynamicMover | |
torsion_id_ranges(core::pose::Pose &pose) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
type() const | protocols::moves::Mover | inline |
type(const std::string &type_in) | protocols::moves::Mover | inline |
~Mover() | protocols::moves::Mover | virtual |
~SidechainMoverBase() | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
~ThermodynamicMover() | protocols::canonical_sampling::ThermodynamicMover | virtual |