_assignments(core::Size resi, core::Size resj) const | protocols::noesy_assign::PeakAssignmentResidueMap | private |
_assignments(core::Size resi, core::Size resj) | protocols::noesy_assign::PeakAssignmentResidueMap | private |
add(CrossPeakList const &) | protocols::noesy_assign::PeakAssignmentResidueMap | |
add(PeakAssignmentOP const &) | protocols::noesy_assign::PeakAssignmentResidueMap | |
add_all_atoms(ResonanceList const &) | protocols::noesy_assign::PeakAssignmentResidueMap | |
assignments(core::Size resi, core::Size resj) const | protocols::noesy_assign::PeakAssignmentResidueMap | |
assignments(core::Size resi, core::Size resj) | protocols::noesy_assign::PeakAssignmentResidueMap | |
assignments(core::Size resi, core::Size resj, PeakAssignments &collector) const | protocols::noesy_assign::PeakAssignmentResidueMap | |
AtomByResList typedef | protocols::noesy_assign::PeakAssignmentResidueMap | private |
AtomList typedef | protocols::noesy_assign::PeakAssignmentResidueMap | private |
atoms_ | protocols::noesy_assign::PeakAssignmentResidueMap | private |
BOGUS_ASSIGNMENTS | protocols::noesy_assign::PeakAssignmentResidueMap | private |
check_for_symmetric_peaks(CrossPeakList &, bool accumulate_symmetry) | protocols::noesy_assign::PeakAssignmentResidueMap | |
compute_Nk(PeakAssignment const &alpha_beta, core::id::NamedAtomID const &gamma_atom, bool connect_in_i, bool connect_in_j, bool sequential, PeakAssignments const &close_to_i_assignments, PeakAssignments const &close_to_j_assignments, core::Real longrange_peak_volume) const | protocols::noesy_assign::PeakAssignmentResidueMap | private |
fill_covalent_gammas(Size, std::map< core::id::NamedAtomID, bool > &collector) const | protocols::noesy_assign::PeakAssignmentResidueMap | private |
has(core::Size resi, core::Size resj) | protocols::noesy_assign::PeakAssignmentResidueMap | |
network_analysis(Size n_total_assignments) | protocols::noesy_assign::PeakAssignmentResidueMap | |
network_analysis2() | protocols::noesy_assign::PeakAssignmentResidueMap | |
PeakAssignmentMap typedef | protocols::noesy_assign::PeakAssignmentResidueMap | |
PeakAssignmentResidueMap() | protocols::noesy_assign::PeakAssignmentResidueMap | |
PeakAssignments typedef | protocols::noesy_assign::PeakAssignmentResidueMap | |
remove(PeakAssignment const &) | protocols::noesy_assign::PeakAssignmentResidueMap | |
ResidueList typedef | protocols::noesy_assign::PeakAssignmentResidueMap | |
residues_ | protocols::noesy_assign::PeakAssignmentResidueMap | private |
total_residue() const | protocols::noesy_assign::PeakAssignmentResidueMap | inline |
~PeakAssignmentResidueMap() | protocols::noesy_assign::PeakAssignmentResidueMap | virtual |