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Size | core::chemical::rna::convert_acgu_to_1234 (char const c) |
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char | core::chemical::rna::get_edge_from_num (Size const num) |
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std::string | core::chemical::rna::get_full_edge_from_num (Size const num) |
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BaseEdge | core::chemical::rna::get_edge_from_char (char const e) |
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char | core::chemical::rna::get_orientation_from_num (Size const num) |
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std::string | core::chemical::rna::get_full_orientation_from_num (Size const num) |
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char | core::chemical::rna::get_side_from_num (Size const num) |
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std::string | core::chemical::rna::get_full_side_from_num (Size const num) |
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BaseDoubletOrientation | core::chemical::rna::get_orientation_from_char (char const o) |
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LW_BaseDoubletOrientation | core::chemical::rna::get_LW_orientation_from_char (char const o) |
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std::string | core::chemical::rna::get_full_LW_orientation_from_num (Size const num) |
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std::string const | core::chemical::rna::first_base_atom (conformation::Residue const &rsd) |
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bool | core::chemical::rna::is_purine (conformation::Residue const &rsd) |
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Size | core::chemical::rna::first_base_atom_index (conformation::Residue const &rsd) |
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std::string const | core::chemical::rna::chi1_torsion_atom (conformation::Residue const &rsd) |
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Size | core::chemical::rna::chi1_torsion_atom_index (conformation::Residue const &rsd) |
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std::string const | core::chemical::rna::default_jump_atom (conformation::Residue const &rsd) |
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bool | core::chemical::rna::possibly_canonical (chemical::AA const &aa1, chemical::AA const &aa2) |
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bool | core::chemical::rna::possibly_canonical_strict (chemical::AA const &aa1, chemical::AA const &aa2) |
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std::string | core::chemical::rna::get_WC_atom (core::chemical::AA const &res_type) |
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void | core::chemical::rna::get_watson_crick_base_pair_atoms (conformation::Residue const &rsd_type1, conformation::Residue const &rsd_type2, std::string &atom1, std::string &atom2) |
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void | core::chemical::rna::get_watson_crick_base_pair_atoms (conformation::Residue const &rsd_type1, conformation::Residue const &rsd_type2, utility::vector1< std::string > &atom_ids1, utility::vector1< std::string > &atom_ids2) |
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Vector | core::chemical::rna::get_rna_base_centroid (conformation::Residue const &rsd, bool verbose) |
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numeric::xyzMatrix< core::Real > | core::chemical::rna::get_rna_base_coordinate_system (conformation::Residue const &rsd, Vector const ¢roid) |
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bool | core::chemical::rna::is_base_phosphate_atom_pair (conformation::Residue const &rsd_1, conformation::Residue const &rsd_2, Size const atomno_1, Size const atomno_2) |
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ChiState | core::chemical::rna::get_residue_base_state (conformation::Residue const &rsd) |
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PuckerState | core::chemical::rna::get_residue_pucker_state (conformation::Residue const &rsd) |
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bool | core::chemical::rna::rna_dna_match (core::chemical::AA const &aa1, core::chemical::AA const &aa2) |
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