allocate_buffers(core::Size) | protocols::canonical_sampling::ParallelTempering | private |
apply(core::pose::Pose &) override | protocols::canonical_sampling::ParallelTempering | inlinevirtual |
attributes_for_tempering_base(utility::tag::AttributeList &, utility::tag::XMLSchemaDefinition &) | protocols::canonical_sampling::TemperingBase | static |
check_temp_consistency() | protocols::canonical_sampling::TemperingBase | protected |
clear() | protocols::canonical_sampling::TemperingBase | protected |
clear_info() | protocols::moves::Mover | inlinevirtual |
clone() const override | protocols::canonical_sampling::ParallelTempering | virtual |
create() | protocols::moves::Mover | virtual |
current_temp() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
current_temp_ | protocols::canonical_sampling::TemperingBase | protected |
deallocate_buffers() | protocols::canonical_sampling::ParallelTempering | private |
exchange_accepts_ | protocols::canonical_sampling::ParallelTempering | private |
exchange_attempts_ | protocols::canonical_sampling::ParallelTempering | private |
exchange_grid_dim() const | protocols::canonical_sampling::TemperatureController | inlinevirtual |
exchange_schedules_ | protocols::canonical_sampling::ParallelTempering | private |
ExchangeSchedule typedef | protocols::canonical_sampling::ParallelTempering | private |
Filters_map typedef | protocols::moves::Mover | |
finalize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) override | protocols::canonical_sampling::ParallelTempering | virtual |
finished_simulation(core::Size trials, core::Size ntrials) | protocols::canonical_sampling::TemperatureController | inlinevirtual |
fresh_instance() const override | protocols::canonical_sampling::ParallelTempering | virtual |
generate_temp_range(core::Real temp_low, core::Real temp_high, core::Size n_levels, InterpolationType interpolation=linear) | protocols::canonical_sampling::TemperingBase | protected |
get_additional_output() | protocols::moves::Mover | virtual |
get_current_job() const | protocols::moves::Mover | |
get_current_tag() const | protocols::moves::Mover | inline |
get_input_pose() const | protocols::moves::Mover | |
get_last_move_status() const | protocols::moves::Mover | |
get_name() const override | protocols::canonical_sampling::ParallelTempering | virtual |
get_native_pose() const | protocols::moves::Mover | |
get_self_ptr() const | protocols::moves::Mover | inline |
get_self_ptr() | protocols::moves::Mover | inline |
get_self_weak_ptr() const | protocols::moves::Mover | inline |
get_self_weak_ptr() | protocols::moves::Mover | inline |
get_type() const | protocols::moves::Mover | inline |
GridCoord typedef | protocols::canonical_sampling::TemperatureController | |
info() | protocols::moves::Mover | inlinevirtual |
info() const | protocols::moves::Mover | inlinevirtual |
init_from_options() override | protocols::canonical_sampling::ParallelTempering | protectedvirtual |
initialize_from_file(std::string const &filename) | protocols::canonical_sampling::TemperingBase | protectedvirtual |
initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle) override | protocols::canonical_sampling::ParallelTempering | virtual |
protocols::canonical_sampling::TemperingBase::initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size level, core::Real temperature, core::Size cycle) override | protocols::canonical_sampling::TemperingBase | virtual |
instance_initialized_ | protocols::canonical_sampling::TemperingBase | protected |
io_stride_ | protocols::canonical_sampling::TemperingBase | protected |
last_energies_ | protocols::canonical_sampling::ParallelTempering | private |
last_exchange_schedule_ | protocols::canonical_sampling::ParallelTempering | private |
last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
level_2_grid_coord(core::Size level) const | protocols::canonical_sampling::TemperatureController | inlinevirtual |
monte_carlo() const | protocols::canonical_sampling::TemperatureController | |
monte_carlo() | protocols::canonical_sampling::TemperatureController | protected |
Mover() | protocols::moves::Mover | |
Mover(std::string const &type_name) | protocols::moves::Mover | |
Mover(Mover const &other) | protocols::moves::Mover | |
mover_name() | protocols::canonical_sampling::ParallelTempering | static |
n_temp_levels() const override | protocols::canonical_sampling::TemperingBase | virtual |
name() | protocols::moves::Mover | inlinestatic |
nlevels_per_dim(core::Size) const | protocols::canonical_sampling::TemperatureController | inlinevirtual |
observe_after_metropolis(protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) override | protocols::canonical_sampling::TemperingBase | virtual |
operator=(ParallelTempering const &) | protocols::canonical_sampling::ParallelTempering | |
protocols::canonical_sampling::TemperingBase::operator=(Mover const &other) | protocols::moves::Mover | |
options_registered_ | protocols::canonical_sampling::ParallelTempering | privatestatic |
ParallelTempering() | protocols::canonical_sampling::ParallelTempering | |
ParallelTempering(ParallelTempering const &) | protocols::canonical_sampling::ParallelTempering | |
Parent typedef | protocols::canonical_sampling::ParallelTempering | private |
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose) override | protocols::canonical_sampling::ParallelTempering | virtual |
Pose typedef | protocols::moves::Mover | |
PoseCOP typedef | protocols::moves::Mover | |
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::canonical_sampling::ParallelTempering | static |
rank() | protocols::canonical_sampling::ParallelTempering | inlineprotected |
rank2tlevel_ | protocols::canonical_sampling::ParallelTempering | private |
rank_ | protocols::canonical_sampling::ParallelTempering | private |
register_options() | protocols::canonical_sampling::ParallelTempering | static |
reinitialize_for_each_job() const override | protocols::canonical_sampling::TemperatureController | inlinevirtual |
reinitialize_for_new_input() const override | protocols::canonical_sampling::TemperatureController | inlinevirtual |
requires_pose() | protocols::canonical_sampling::ThermodynamicObserver | inlinevirtual |
reset_status() | protocols::moves::Mover | |
reset_temp_counter() | protocols::canonical_sampling::TemperingBase | inlineprotected |
restart_simulation(core::pose::Pose &, MetropolisHastingsMover &, core::Size &, core::Size &, core::Real &) | protocols::canonical_sampling::ThermodynamicObserver | inlinevirtual |
set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
set_current_temp(core::Size new_temp) | protocols::canonical_sampling::TemperingBase | protectedvirtual |
set_defaults() | protocols::canonical_sampling::ParallelTempering | protected |
set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
set_monte_carlo(protocols::moves::MonteCarloOP monte_carlo) | protocols::canonical_sampling::TemperatureController | virtual |
set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_temperatures(utility::vector1< core::Real > const &) | protocols::canonical_sampling::TemperingBase | protected |
set_type(std::string const &setting) | protocols::moves::Mover | inline |
setup_exchange_schedule(Size nlevels) | protocols::canonical_sampling::ParallelTempering | private |
show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
shuffle_temperatures(const double *energies) | protocols::canonical_sampling::ParallelTempering | private |
start_time_ | protocols::canonical_sampling::ParallelTempering | private |
stats_file() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
stats_file_ | protocols::canonical_sampling::TemperingBase | protected |
stats_line_output() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
stats_line_output_ | protocols::canonical_sampling::TemperingBase | protected |
stats_silent_output() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
stats_silent_output_ | protocols::canonical_sampling::TemperingBase | protected |
Strings typedef | protocols::moves::Mover | |
TagCOP typedef | protocols::moves::Mover | |
temp_trial_count_ | protocols::canonical_sampling::TemperingBase | protected |
temperature() const override | protocols::canonical_sampling::TemperingBase | virtual |
temperature(core::Size level) const override | protocols::canonical_sampling::TemperingBase | virtual |
temperature_level() const override | protocols::canonical_sampling::TemperingBase | inlinevirtual |
temperature_move(core::Real score) override | protocols::canonical_sampling::ParallelTempering | virtual |
protocols::canonical_sampling::TemperingBase::temperature_move(core::pose::Pose &pose) | protocols::canonical_sampling::TemperatureController | virtual |
temperature_stride_ | protocols::canonical_sampling::TemperingBase | protected |
TemperatureController() | protocols::canonical_sampling::TemperatureController | |
TemperatureController(TemperatureController const &) | protocols::canonical_sampling::TemperatureController | |
temperatures_ | protocols::canonical_sampling::TemperingBase | protected |
TemperingBase() | protocols::canonical_sampling::TemperingBase | |
TemperingBase(TemperingBase const &) | protocols::canonical_sampling::TemperingBase | |
test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
ThermodynamicObserver() | protocols::canonical_sampling::ThermodynamicObserver | |
time_for_temp_move() | protocols::canonical_sampling::TemperingBase | inlineprotectedvirtual |
tlevel2rank_ | protocols::canonical_sampling::ParallelTempering | private |
total_mpi_wait_time_ | protocols::canonical_sampling::ParallelTempering | private |
trial_counter() | protocols::canonical_sampling::TemperingBase | inlineprotected |
trial_counter_ | protocols::canonical_sampling::TemperingBase | protected |
trust_current_temp_ | protocols::canonical_sampling::TemperingBase | protected |
type() const | protocols::moves::Mover | inline |
type(const std::string &type_in) | protocols::moves::Mover | inline |
write_to_file(std::string const &file_in, std::string const &output_name, utility::vector1< core::Real > const &wcounts) | protocols::canonical_sampling::TemperingBase | protectedvirtual |
~Mover() override | protocols::moves::Mover | |
~ParallelTempering() override | protocols::canonical_sampling::ParallelTempering | |
~ThermodynamicObserver() override | protocols::canonical_sampling::ThermodynamicObserver | |