add_batch(std::string const &, core::Size id=0) | protocols::jd2::JobDistributor | virtual |
batch(core::Size batch_id) | protocols::jd2::JobDistributor | inlineprotected |
batch_underflow() | protocols::jd2::JobDistributor | inlineprotectedvirtual |
batches_ | protocols::jd2::JobDistributor | private |
begin_critical_section() | protocols::jd2::JobDistributor | protected |
check_for_parser_in_go_main() | protocols::jd2::JobDistributor | protected |
clear_current_job_output() | protocols::jd2::JobDistributor | protected |
create_singleton_instance() | protocols::jd2::JobDistributor | privatestatic |
current_batch_id() const | protocols::jd2::JobDistributor | inline |
current_batch_id_ | protocols::jd2::JobDistributor | private |
current_job() const | protocols::jd2::JobDistributor | virtual |
current_job_ | protocols::jd2::JobDistributor | private |
current_job_finished() | protocols::jd2::JobDistributor | protectedvirtual |
current_job_id() const | protocols::jd2::JobDistributor | |
current_job_id_ | protocols::jd2::JobDistributor | private |
current_output_name() const | protocols::jd2::JobDistributor | virtual |
end_critical_section() | protocols::jd2::JobDistributor | protected |
get_current_batch() const | protocols::jd2::JobDistributor | |
get_instance() | protocols::jd2::JobDistributor | static |
get_job_list_from_job_inputter() | protocols::jd2::JobDistributor | private |
get_job_time_estimate() const | protocols::jd2::JobDistributor | protected |
get_jobs() const | protocols::jd2::JobDistributor | protected |
get_jobs_nonconst() | protocols::jd2::JobDistributor | protected |
get_new_job_id()=0 | protocols::jd2::JobDistributor | protectedpure virtual |
go(protocols::moves::MoverOP mover) | protocols::jd2::JobDistributor | virtual |
go(protocols::moves::MoverOP mover, JobOutputterOP jo) | protocols::jd2::JobDistributor | |
go(protocols::moves::MoverOP mover, JobInputterOP ji) | protocols::jd2::JobDistributor | |
go(protocols::moves::MoverOP mover, JobInputterOP ji, JobOutputterOP jo) | protocols::jd2::JobDistributor | |
go_main(protocols::moves::MoverOP mover) | protocols::jd2::JobDistributor | protected |
handle_interrupt()=0 | protocols::jd2::JobDistributor | protectedpure virtual |
has_been_instantiated() | protocols::jd2::JobDistributor | static |
increment_failed_jobs() | protocols::jd2::JobDistributor | inlineprotected |
init_jd() | protocols::jd2::JobDistributor | private |
instance_ | protocols::jd2::JobDistributor | privatestatic |
jd2_signal_handler(int Signal) | protocols::jd2::JobDistributor | protectedstatic |
job_failed(core::pose::Pose &, bool will_retry) | protocols::jd2::JobDistributor | protectedvirtual |
job_inputter() const | protocols::jd2::JobDistributor | |
job_inputter_ | protocols::jd2::JobDistributor | private |
job_inputter_input_source() const | protocols::jd2::JobDistributor | |
job_outputter() const | protocols::jd2::JobDistributor | |
job_outputter_ | protocols::jd2::JobDistributor | private |
job_succeeded(core::pose::Pose &pose, core::Real run_time, std::string const &tag) | protocols::jd2::JobDistributor | protectedvirtual |
job_succeeded_additional_output(core::pose::Pose &pose, std::string const &tag) | protocols::jd2::JobDistributor | protectedvirtual |
JobDistributor() | protocols::jd2::JobDistributor | protected |
JobDistributor(bool empty) | protocols::jd2::JobDistributor | protected |
JobDistributorFactory class | protocols::jd2::JobDistributor | friend |
jobs_ | protocols::jd2::JobDistributor | private |
last_completed_job_ | protocols::jd2::JobDistributor | private |
load_new_batch() | protocols::jd2::JobDistributor | protectedvirtual |
mark_current_job_id_for_repetition()=0 | protocols::jd2::JobDistributor | protectedpure virtual |
mark_job_as_bad(core::Size job_id) | protocols::jd2::JobDistributor | protected |
mark_job_as_completed(core::Size job_id, core::Real run_time) | protocols::jd2::JobDistributor | protected |
mpi_finalize(bool finalize) | protocols::jd2::JobDistributor | virtual |
next_batch() | protocols::jd2::JobDistributor | protectedvirtual |
note_all_jobs_finished() | protocols::jd2::JobDistributor | protectedvirtual |
nr_batches() const | protocols::jd2::JobDistributor | inlineprotected |
number_failed_jobs_ | protocols::jd2::JobDistributor | private |
obtain_new_job(bool re_consider_current_job=false) | protocols::jd2::JobDistributor | protected |
parser() const | protocols::jd2::JobDistributor | protected |
parser_ | protocols::jd2::JobDistributor | private |
populate_batch_list_from_cmd() | protocols::jd2::JobDistributor | private |
remove_bad_inputs_from_job_list() | protocols::jd2::JobDistributor | protectedvirtual |
remove_system_signal_handler() | protocols::jd2::JobDistributor | protectedstatic |
reset_job_state() | protocols::jd2::JobDistributor | private |
restart() | protocols::jd2::JobDistributor | virtual |
RosettaScriptsParserOP typedef | protocols::jd2::JobDistributor | private |
run_one_job(protocols::moves::MoverOP &mover, time_t allstarttime, std::string &last_inner_job_tag, std::string &last_output_tag, core::Size &last_batch_id, core::Size &retries_this_job, bool first_job) | protocols::jd2::JobDistributor | protected |
set_batch_id(core::Size setting) | protocols::jd2::JobDistributor | protected |
set_current_job_by_index(core::Size curr_job_index) | protocols::jd2::JobDistributor | protected |
set_job_inputter(JobInputterOP new_job_inputter) | protocols::jd2::JobDistributor | |
set_job_outputter(const JobOutputterOP &new_job_outputter) | protocols::jd2::JobDistributor | |
setup_pymol_observer(core::pose::Pose &pose) | protocols::jd2::JobDistributor | protected |
setup_system_signal_handler(void(*prev_fn)(int)=jd2_signal_handler) | protocols::jd2::JobDistributor | protectedstatic |
total_nr_jobs() const | protocols::jd2::JobDistributor | inline |
using_parser() const | protocols::jd2::JobDistributor | protected |
write_output_from_job(core::pose::Pose &pose, protocols::moves::MoverOP mover_copy, protocols::moves::MoverStatus status, core::Size jobtime, core::Size &retries_this_job) | protocols::jd2::JobDistributor | protected |
~JobDistributor() | protocols::jd2::JobDistributor | virtual |