atomic_interaction_cutoff() const | core::scoring::methods::SecondaryStructureEnergy | virtual |
clone() const | core::scoring::methods::SecondaryStructureEnergy | virtual |
defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
EnergyMethod(EnergyMethod const &src) | core::scoring::methods::EnergyMethod | |
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const | core::scoring::methods::EnergyMethod | virtual |
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
finalize_after_minimizing(pose::Pose &pose) const | core::scoring::methods::EnergyMethod | virtual |
finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const | core::scoring::methods::SecondaryStructureEnergy | virtual |
indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const | core::scoring::methods::SecondaryStructureEnergy | virtual |
method_type() const | core::scoring::methods::WholeStructureEnergy | virtual |
minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
parent typedef | core::scoring::methods::SecondaryStructureEnergy | |
potential_ | core::scoring::methods::SecondaryStructureEnergy | private |
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | virtual |
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const | core::scoring::methods::EnergyMethod | virtual |
score_types() const | core::scoring::methods::EnergyMethod | inline |
SecondaryStructureEnergy() | core::scoring::methods::SecondaryStructureEnergy | |
SecondaryStructureEnergy(SecondaryStructureEnergy const &src) | core::scoring::methods::SecondaryStructureEnergy | |
set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | protected |
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::methods::EnergyMethod | virtual |
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::methods::EnergyMethod | virtual |
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
setup_for_scoring(pose::Pose &pose, ScoreFunction const &scorefxn) const | core::scoring::methods::SecondaryStructureEnergy | virtual |
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const | core::scoring::methods::EnergyMethod | virtual |
show_additional_info(std::ostream &, pose::Pose &, bool) const | core::scoring::methods::EnergyMethod | virtual |
update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | virtual |
version() const | core::scoring::methods::SecondaryStructureEnergy | privatevirtual |
WholeStructureEnergy(EnergyMethodCreatorOP) | core::scoring::methods::WholeStructureEnergy | |
~EnergyMethod() | core::scoring::methods::EnergyMethod | virtual |
~WholeStructureEnergy() | core::scoring::methods::WholeStructureEnergy | inlinevirtual |