core::chemical::Atom Member List

This is the complete list of members for core::chemical::Atom, including all inherited members.

abs_stereochem_	core::chemical::Atom	private
absolute_stereochemistry() const	core::chemical::Atom	inline
Atom()	core::chemical::Atom
Atom(std::string const &name_in, std::string const &mm_name, Size const mm_atom_type_index, ElementCOP element, Real const charge, Vector const &ideal_xyz)	core::chemical::Atom
Atom(Atom const &src)	core::chemical::Atom
atom_type_index() const	core::chemical::Atom	inline
atom_type_index(Size const &atom_type_index)	core::chemical::Atom	inline
atom_type_index_	core::chemical::Atom	private
bonded_orbitals() const	core::chemical::Atom	inline
bonded_orbitals()	core::chemical::Atom	inline
bonded_orbitals_	core::chemical::Atom	private
charge() const	core::chemical::Atom	inline
charge(Real const &charge)	core::chemical::Atom	inline
charge_	core::chemical::Atom	private
element() const	core::chemical::Atom
element_	core::chemical::Atom	private
element_type() const	core::chemical::Atom	inline
element_type(ElementCOP element)	core::chemical::Atom	inline
formal_charge() const	core::chemical::Atom	inline
formal_charge(int charge)	core::chemical::Atom	inline
formal_charge_	core::chemical::Atom	private
gasteiger_atom_type() const	core::chemical::Atom
gasteiger_atom_type(core::chemical::gasteiger::GasteigerAtomTypeDataCOP gasteiger_atom_type)	core::chemical::Atom
gasteiger_atom_type_	core::chemical::Atom	private
greek_d_	core::chemical::Atom	private
greek_distance() const	core::chemical::Atom	inline
greek_distance(GreekDistance const setting)	core::chemical::Atom
has_orbitals() const	core::chemical::Atom	inline
has_orbitals(bool orbitals)	core::chemical::Atom	inline
has_orbitals_	core::chemical::Atom	private
has_property(std::string const &property) const	core::chemical::Atom	inline
has_property(AtomProperty const property) const	core::chemical::Atom	inline
heavyatom_has_polar_hydrogens() const	core::chemical::Atom	inline
heavyatom_has_polar_hydrogens(bool setting)	core::chemical::Atom	inline
ideal_xyz() const	core::chemical::Atom	inline
ideal_xyz(Vector const &ideal_xyz)	core::chemical::Atom	inline
ideal_xyz_	core::chemical::Atom	private
is_acceptor() const	core::chemical::Atom	inline
is_acceptor(bool setting)	core::chemical::Atom	inline
is_fake() const	core::chemical::Atom
is_haro() const	core::chemical::Atom	inline
is_haro(bool setting)	core::chemical::Atom	inline
is_hydrogen() const	core::chemical::Atom	inline
is_hydrogen(bool setting)	core::chemical::Atom	inline
is_hydrogen_	core::chemical::Atom	private
is_polar_hydrogen() const	core::chemical::Atom	inline
is_polar_hydrogen(bool setting)	core::chemical::Atom	inline
is_virtual() const	core::chemical::Atom	inline
is_virtual(bool setting)	core::chemical::Atom	inline
mm_atom_type_index() const	core::chemical::Atom	inline
mm_atom_type_index(Size const &mm_atom_type_index)	core::chemical::Atom	inline
mm_atom_type_index_	core::chemical::Atom	private
mm_name() const	core::chemical::Atom	inline
mm_name(std::string const &name)	core::chemical::Atom	inline
mm_name_	core::chemical::Atom	private
name() const	core::chemical::Atom	inline
name(std::string const &name)	core::chemical::Atom	inline
name_	core::chemical::Atom	private
operator=(Atom const &atom)	core::chemical::Atom
operator==(Atom const &atom) const	core::chemical::Atom	inline
properties() const	core::chemical::Atom	inline
properties_	core::chemical::Atom	private
set_absolute_stereochemistry(char const setting)	core::chemical::Atom
set_property(std::string const &property, bool const setting)	core::chemical::Atom	inline
set_property(AtomProperty const property, bool const setting)	core::chemical::Atom	inline
show(std::ostream &out=std::cout) const	core::chemical::Atom
~Atom()	core::chemical::Atom