OptionKeys.cc.gen3.hh File Reference

Namespaces
	chemical
	constraints
	corrections
	corrections::score
	corrections::chemical
	corrections::genpotential
	corrections::shapovalov_lib
	corrections::water
	enzymes
	evaluation
	filters
	gpu
	jumps
	loops

Functions
StringVectorOptionKey const	chemical::set_atom_properties ("chemical:set_atom_properties")
StringVectorOptionKey const	chemical::patch_selectors ("chemical:patch_selectors")
BooleanOptionKey const	chemical::override_rsd_type_limit ("chemical:override_rsd_type_limit")
StringVectorOptionKey const	chemical::clone_atom_types ("chemical:clone_atom_types")
StringVectorOptionKey const	chemical::reassign_atom_types ("chemical:reassign_atom_types")
StringVectorOptionKey const	chemical::reassign_icoor ("chemical:reassign_icoor")
StringVectorOptionKey const	chemical::set_atomic_charge ("chemical:set_atomic_charge")
StringVectorOptionKey const	chemical::set_patch_atomic_charge ("chemical:set_patch_atomic_charge")
BooleanOptionKey const	chemical::enlarge_H_lj ("chemical:enlarge_H_lj")
BooleanOptionKey const	chemical::no_hbonds_to_ether_oxygens ("chemical:no_hbonds_to_ether_oxygens")
BooleanOptionKey const	chemical::unset_acceptor_ether_oxygens ("chemical:unset_acceptor_ether_oxygens")
BooleanOptionKey const	constraints::constraints ("constraints")
BooleanOptionKey const	constraints::exit_on_bad_read ("constraints:exit_on_bad_read")
StringVectorOptionKey const	constraints::cst_file ("constraints:cst_file")
RealOptionKey const	constraints::cst_weight ("constraints:cst_weight")
RealOptionKey const	constraints::max_cst_dist ("constraints:max_cst_dist")
StringVectorOptionKey const	constraints::cst_fa_file ("constraints:cst_fa_file")
RealOptionKey const	constraints::cst_fa_weight ("constraints:cst_fa_weight")
BooleanOptionKey const	constraints::normalize_mixture_func ("constraints:normalize_mixture_func")
BooleanOptionKey const	constraints::penalize_mixture_func ("constraints:penalize_mixture_func")
FileOptionKey const	constraints::forest_file ("constraints:forest_file")
BooleanOptionKey const	constraints::compute_total_dist_cst ("constraints:compute_total_dist_cst")
IntegerOptionKey const	constraints::cull_with_native ("constraints:cull_with_native")
FileOptionKey const	constraints::dump_cst_set ("constraints:dump_cst_set")
IntegerVectorOptionKey const	constraints::evaluate_max_seq_sep ("constraints:evaluate_max_seq_sep")
BooleanOptionKey const	constraints::named ("constraints:named")
BooleanOptionKey const	constraints::no_cst_in_relax ("constraints:no_cst_in_relax")
BooleanOptionKey const	constraints::no_linearize_bounded ("constraints:no_linearize_bounded")
RealOptionKey const	constraints::pocket_constraint_weight ("constraints:pocket_constraint_weight")
BooleanOptionKey const	constraints::pocket_zero_derivatives ("constraints:pocket_zero_derivatives")
BooleanOptionKey const	constraints::viol ("constraints:viol")
IntegerOptionKey const	constraints::viol_level ("constraints:viol_level")
StringOptionKey const	constraints::viol_type ("constraints:viol_type")
RealOptionKey const	constraints::sog_cst_param ("constraints:sog_cst_param")
RealOptionKey const	constraints::sog_upper_bound ("constraints:sog_upper_bound")
BooleanOptionKey const	constraints::epr_distance ("constraints:epr_distance")
IntegerOptionKey const	constraints::combine ("constraints:combine")
FileOptionKey const	constraints::combine_exclude_region ("constraints:combine_exclude_region")
BooleanOptionKey const	constraints::skip_redundant ("constraints:skip_redundant")
IntegerOptionKey const	constraints::skip_redundant_width ("constraints:skip_redundant_width")
BooleanVectorOptionKey const	constraints::force_pdb_info_mapping ("constraints:force_pdb_info_mapping")
BooleanOptionKey const	corrections::corrections ("corrections")
BooleanOptionKey const	corrections::beta ("corrections:beta")
BooleanOptionKey const	corrections::beta_cart ("corrections:beta_cart")
BooleanOptionKey const	corrections::beta_nov16 ("corrections:beta_nov16")
BooleanOptionKey const	corrections::beta_nov16_cart ("corrections:beta_nov16_cart")
BooleanOptionKey const	corrections::beta_july15 ("corrections:beta_july15")
BooleanOptionKey const	corrections::beta_july15_cart ("corrections:beta_july15_cart")
BooleanOptionKey const	corrections::gen_potential ("corrections:gen_potential")
BooleanOptionKey const	corrections::newdna ("corrections:newdna")
BooleanOptionKey const	corrections::restore_talaris_behavior ("corrections:restore_talaris_behavior")
BooleanOptionKey const	corrections::correct ("corrections:correct")
BooleanOptionKey const	corrections::hbond_sp2_correction ("corrections:hbond_sp2_correction")
BooleanOptionKey const	corrections::facts_default ("corrections:facts_default")
BooleanOptionKey const	corrections::score::score ("corrections:score")
BooleanOptionKey const	corrections::score::bbdep_omega ("corrections:score:bbdep_omega")
BooleanOptionKey const	corrections::score::bbdep_bond_params ("corrections:score:bbdep_bond_params")
BooleanOptionKey const	corrections::score::bbdep_bond_devs ("corrections:score:bbdep_bond_devs")
BooleanOptionKey const	corrections::score::fa_dun_canonicals_use_voronoi ("corrections:score:fa_dun_canonicals_use_voronoi")
BooleanOptionKey const	corrections::score::fa_dun_noncanonicals_use_voronoi ("corrections:score:fa_dun_noncanonicals_use_voronoi")
BooleanOptionKey const	corrections::score::fa_dun_correct_rotamer_well_order ("corrections:score:fa_dun_correct_rotamer_well_order")
BooleanOptionKey const	corrections::score::fa_dun_correct_achiral_peptoid_libraries ("corrections:score:fa_dun_correct_achiral_peptoid_libraries")
BooleanOptionKey const	corrections::score::no_his_his_pairE ("corrections:score:no_his_his_pairE")
BooleanOptionKey const	corrections::score::no_his_DE_pairE ("corrections:score:no_his_DE_pairE")
StringOptionKey const	corrections::score::p_aa_pp ("corrections:score:p_aa_pp")
BooleanOptionKey const	corrections::score::p_aa_pp_nogridshift ("corrections:score:p_aa_pp_nogridshift")
BooleanOptionKey const	corrections::score::rama_not_squared ("corrections:score:rama_not_squared")
FileOptionKey const	corrections::score::rama_map ("corrections:score:rama_map")
FileOptionKey const	corrections::score::rama_pp_map ("corrections:score:rama_pp_map")
FileOptionKey const	corrections::score::rama_map_average_L_flat ("corrections:score:rama_map_average_L_flat")
FileOptionKey const	corrections::score::rama_map_sym_average_L_flat ("corrections:score:rama_map_sym_average_L_flat")
FileOptionKey const	corrections::score::rama_map_sym_gly_flat ("corrections:score:rama_map_sym_gly_flat")
FileOptionKey const	corrections::score::rama_map_sym_pro_flat ("corrections:score:rama_map_sym_pro_flat")
FileOptionKey const	corrections::score::rama_map_average_L_flat_stringent ("corrections:score:rama_map_average_L_flat_stringent")
FileOptionKey const	corrections::score::rama_map_sym_average_L_flat_stringent ("corrections:score:rama_map_sym_average_L_flat_stringent")
FileOptionKey const	corrections::score::rama_map_sym_gly_flat_stringent ("corrections:score:rama_map_sym_gly_flat_stringent")
FileOptionKey const	corrections::score::rama_map_sym_pro_flat_stringent ("corrections:score:rama_map_sym_pro_flat_stringent")
BooleanOptionKey const	corrections::score::rama_prepro_steep ("corrections:score:rama_prepro_steep")
BooleanOptionKey const	corrections::score::rama_prepro_nobidentate ("corrections:score:rama_prepro_nobidentate")
BooleanOptionKey const	corrections::score::cenrot ("corrections:score:cenrot")
BooleanOptionKey const	corrections::score::dun10 ("corrections:score:dun10")
StringOptionKey const	corrections::score::dun10_dir ("corrections:score:dun10_dir")
StringOptionKey const	corrections::score::dun02_file ("corrections:score:dun02_file")
StringOptionKey const	corrections::score::ch_o_bond_potential ("corrections:score:ch_o_bond_potential")
RealOptionKey const	corrections::score::lj_hbond_hdis ("corrections:score:lj_hbond_hdis")
RealOptionKey const	corrections::score::lj_hbond_OH_donor_dis ("corrections:score:lj_hbond_OH_donor_dis")
BooleanOptionKey const	corrections::score::score12prime ("corrections:score:score12prime")
RealOptionKey const	corrections::score::hbond_energy_shift ("corrections:score:hbond_energy_shift")
RealOptionKey const	corrections::score::hb_sp2_BAH180_rise ("corrections:score:hb_sp2_BAH180_rise")
RealOptionKey const	corrections::score::hb_sp2_outer_width ("corrections:score:hb_sp2_outer_width")
BooleanOptionKey const	corrections::score::hb_sp2_chipen ("corrections:score:hb_sp2_chipen")
BooleanOptionKey const	corrections::score::hbond_measure_sp3acc_BAH_from_hvy ("corrections:score:hbond_measure_sp3acc_BAH_from_hvy")
BooleanOptionKey const	corrections::score::hb_fade_energy ("corrections:score:hb_fade_energy")
BooleanOptionKey const	corrections::score::hb_exclude_ether_oxygens ("corrections:score:hb_exclude_ether_oxygens")
BooleanOptionKey const	corrections::score::hb_cen_soft ("corrections:score:hb_cen_soft")
BooleanOptionKey const	corrections::score::use_bicubic_interpolation ("corrections:score:use_bicubic_interpolation")
BooleanOptionKey const	corrections::score::dun_normsd ("corrections:score:dun_normsd")
BooleanOptionKey const	corrections::score::dun_entropy_correction ("corrections:score:dun_entropy_correction")
BooleanOptionKey const	corrections::score::no_autogen_cart_improper ("corrections:score:no_autogen_cart_improper")
BooleanOptionKey const	corrections::chemical::chemical ("corrections:chemical")
BooleanOptionKey const	corrections::chemical::icoor_05_2009 ("corrections:chemical:icoor_05_2009")
BooleanOptionKey const	corrections::chemical::parse_charge ("corrections:chemical:parse_charge")
BooleanOptionKey const	corrections::chemical::expand_st_chi2sampling ("corrections:chemical:expand_st_chi2sampling")
StringOptionKey const	corrections::chemical::alternate_fullatom_ats ("corrections:chemical:alternate_fullatom_ats")
BooleanOptionKey const	corrections::genpotential::genpotential ("corrections:genpotential")
StringVectorOptionKey const	corrections::genpotential::set_torsion_params ("corrections:genpotential:set_torsion_params")
StringVectorOptionKey const	corrections::genpotential::set_special_torsion_params ("corrections:genpotential:set_special_torsion_params")
BooleanOptionKey const	corrections::shapovalov_lib_fixes_enable ("corrections:shapovalov_lib_fixes_enable")
BooleanOptionKey const	corrections::shapovalov_lib::shapovalov_lib ("corrections:shapovalov_lib")
BooleanOptionKey const	corrections::shapovalov_lib::shap_dun10_enable ("corrections:shapovalov_lib:shap_dun10_enable")
StringOptionKey const	corrections::shapovalov_lib::shap_dun10_smooth_level ("corrections:shapovalov_lib:shap_dun10_smooth_level")
StringOptionKey const	corrections::shapovalov_lib::shap_dun10_dir ("corrections:shapovalov_lib:shap_dun10_dir")
BooleanOptionKey const	corrections::shapovalov_lib::shap_dun10_use_minus_log_P_ignore_P ("corrections:shapovalov_lib:shap_dun10_use_minus_log_P_ignore_P")
BooleanOptionKey const	corrections::shapovalov_lib::shap_rama_enable ("corrections:shapovalov_lib:shap_rama_enable")
StringOptionKey const	corrections::shapovalov_lib::shap_rama_smooth_level ("corrections:shapovalov_lib:shap_rama_smooth_level")
FileOptionKey const	corrections::shapovalov_lib::shap_rama_map ("corrections:shapovalov_lib:shap_rama_map")
BooleanOptionKey const	corrections::shapovalov_lib::shap_rama_nogridshift ("corrections:shapovalov_lib:shap_rama_nogridshift")
BooleanOptionKey const	corrections::shapovalov_lib::shap_p_aa_pp_enable ("corrections:shapovalov_lib:shap_p_aa_pp_enable")
StringOptionKey const	corrections::shapovalov_lib::shap_p_aa_pp_smooth_level ("corrections:shapovalov_lib:shap_p_aa_pp_smooth_level")
StringOptionKey const	corrections::shapovalov_lib::shap_p_aa_pp ("corrections:shapovalov_lib:shap_p_aa_pp")
BooleanOptionKey const	corrections::water::water ("corrections:water")
BooleanOptionKey const	corrections::water::water_bump_check ("corrections:water:water_bump_check")
RealOptionKey const	corrections::water::lkb_overlap_distance ("corrections:water:lkb_overlap_distance")
RealOptionKey const	corrections::water::lkb_cluster_radius ("corrections:water:lkb_cluster_radius")
RealOptionKey const	corrections::water::lkb_rotset_radius ("corrections:water:lkb_rotset_radius")
StringOptionKey const	corrections::water::wat_rot_params ("corrections:water:wat_rot_params")
RealOptionKey const	corrections::water::dwell_cutoff ("corrections:water:dwell_cutoff")
RealOptionKey const	corrections::water::cluster_radius ("corrections:water:cluster_radius")
RealOptionKey const	corrections::water::cluster_cutoff ("corrections:water:cluster_cutoff")
RealOptionKey const	corrections::water::watlim_scale ("corrections:water:watlim_scale")
StringOptionKey const	corrections::water::pointwater_params ("corrections:water:pointwater_params")
RealOptionKey const	corrections::water::ordered_pt_wat_penalty ("corrections:water:ordered_pt_wat_penalty")
RealOptionKey const	corrections::water::pointwat_wat_bonus ("corrections:water:pointwat_wat_bonus")
RealOptionKey const	corrections::water::pointwat_wat_bonus_width ("corrections:water:pointwat_wat_bonus_width")
RealOptionKey const	corrections::water::ordered_wat_penalty ("corrections:water:ordered_wat_penalty")
RealOptionKey const	corrections::water::wat_rot_sampling ("corrections:water:wat_rot_sampling")
BooleanOptionKey const	corrections::water::wat_axis_sampling ("corrections:water:wat_axis_sampling")
RealOptionKey const	corrections::water::axis_rot_sampling ("corrections:water:axis_rot_sampling")
BooleanOptionKey const	corrections::water::include_vrt ("corrections:water:include_vrt")
BooleanOptionKey const	enzymes::enzymes ("enzymes")
StringOptionKey const	enzymes::species ("enzymes:species")
StringOptionKey const	enzymes::enzyme ("enzymes:enzyme")
RealOptionKey const	enzymes::efficiency ("enzymes:efficiency")
BooleanOptionKey const	evaluation::evaluation ("evaluation")
FileVectorOptionKey const	evaluation::rmsd_target ("evaluation:rmsd_target")
StringVectorOptionKey const	evaluation::rmsd_column ("evaluation:rmsd_column")
FileVectorOptionKey const	evaluation::rmsd_select ("evaluation:rmsd_select")
FileVectorOptionKey const	evaluation::align_rmsd_target ("evaluation:align_rmsd_target")
FileVectorOptionKey const	evaluation::structural_similarity ("evaluation:structural_similarity")
BooleanOptionKey const	evaluation::contact_map ("evaluation:contact_map")
StringVectorOptionKey const	evaluation::jscore_evaluator ("evaluation:jscore_evaluator")
StringVectorOptionKey const	evaluation::align_rmsd_column ("evaluation:align_rmsd_column")
FileVectorOptionKey const	evaluation::align_rmsd_fns ("evaluation:align_rmsd_fns")
StringOptionKey const	evaluation::align_rmsd_format ("evaluation:align_rmsd_format")
StringOptionKey const	evaluation::rms_type ("evaluation:rms_type")
StringOptionKey const	evaluation::predicted_burial_fn ("evaluation:predicted_burial_fn")
FileOptionKey const	evaluation::pool ("evaluation:pool")
FileVectorOptionKey const	evaluation::rmsd ("evaluation:rmsd")
FileVectorOptionKey const	evaluation::chirmsd ("evaluation:chirmsd")
BooleanOptionKey const	evaluation::gdtmm ("evaluation:gdtmm")
BooleanOptionKey const	evaluation::gdttm ("evaluation:gdttm")
BooleanOptionKey const	evaluation::score_with_rmsd ("evaluation:score_with_rmsd")
FileVectorOptionKey const	evaluation::constraints ("evaluation:constraints")
FileVectorOptionKey const	evaluation::constraints_column ("evaluation:constraints_column")
FileVectorOptionKey const	evaluation::combined_constraints ("evaluation:combined_constraints")
FileVectorOptionKey const	evaluation::combined_constraints_column ("evaluation:combined_constraints_column")
IntegerOptionKey const	evaluation::combine_statistics ("evaluation:combine_statistics")
StringVectorOptionKey const	evaluation::chemical_shifts ("evaluation:chemical_shifts")
StringOptionKey const	evaluation::sparta_dir ("evaluation:sparta_dir")
StringVectorOptionKey const	evaluation::cam_shifts ("evaluation:cam_shifts")
StringVectorOptionKey const	evaluation::pales ("evaluation:pales")
FileVectorOptionKey const	evaluation::extra_score ("evaluation:extra_score")
FileVectorOptionKey const	evaluation::extra_score_patch ("evaluation:extra_score_patch")
StringVectorOptionKey const	evaluation::extra_score_column ("evaluation:extra_score_column")
FileVectorOptionKey const	evaluation::extra_score_select ("evaluation:extra_score_select")
FileVectorOptionKey const	evaluation::rdc_target ("evaluation:rdc_target")
BooleanOptionKey const	evaluation::symmetric_rmsd ("evaluation:symmetric_rmsd")
StringVectorOptionKey const	evaluation::rdc_column ("evaluation:rdc_column")
StringVectorOptionKey const	evaluation::rdc ("evaluation:rdc")
StringOptionKey const	evaluation::built_in_rdc ("evaluation:built_in_rdc")
BooleanOptionKey const	evaluation::jump_nr ("evaluation:jump_nr")
IntegerVectorOptionKey const	evaluation::score_exclude_res ("evaluation:score_exclude_res")
IntegerOptionKey const	evaluation::score_sscore_short_helix ("evaluation:score_sscore_short_helix")
IntegerOptionKey const	evaluation::score_sscore_maxloop ("evaluation:score_sscore_maxloop")
IntegerOptionKey const	evaluation::window_size ("evaluation:window_size")
StringOptionKey const	evaluation::I_sc ("evaluation:I_sc")
BooleanOptionKey const	evaluation::Irms ("evaluation:Irms")
BooleanOptionKey const	evaluation::Ca_Irms ("evaluation:Ca_Irms")
BooleanOptionKey const	evaluation::Fnat ("evaluation:Fnat")
BooleanOptionKey const	evaluation::Lrmsd ("evaluation:Lrmsd")
BooleanOptionKey const	evaluation::Fnonnat ("evaluation:Fnonnat")
BooleanOptionKey const	evaluation::DockMetrics ("evaluation:DockMetrics")
BooleanOptionKey const	filters::filters ("filters")
BooleanOptionKey const	filters::disable_all_filters ("filters:disable_all_filters")
BooleanOptionKey const	filters::disable_rg_filter ("filters:disable_rg_filter")
BooleanOptionKey const	filters::disable_co_filter ("filters:disable_co_filter")
BooleanOptionKey const	filters::disable_sheet_filter ("filters:disable_sheet_filter")
RealOptionKey const	filters::set_pddf_filter ("filters:set_pddf_filter")
RealOptionKey const	filters::set_saxs_filter ("filters:set_saxs_filter")
BooleanOptionKey const	gpu::gpu ("gpu")
IntegerOptionKey const	gpu::device ("gpu:device")
IntegerOptionKey const	gpu::threads ("gpu:threads")
BooleanOptionKey const	jumps::jumps ("jumps")
BooleanOptionKey const	jumps::evaluate ("jumps:evaluate")
FileOptionKey const	jumps::extra_frags_for_ss ("jumps:extra_frags_for_ss")
BooleanOptionKey const	jumps::fix_chainbreak ("jumps:fix_chainbreak")
FileOptionKey const	jumps::fix_jumps ("jumps:fix_jumps")
FileOptionKey const	jumps::jump_lib ("jumps:jump_lib")
FileOptionKey const	jumps::loop_definition_from_file ("jumps:loop_definition_from_file")
BooleanOptionKey const	jumps::no_chainbreak_in_relax ("jumps:no_chainbreak_in_relax")
FileOptionKey const	jumps::pairing_file ("jumps:pairing_file")
IntegerVectorOptionKey const	jumps::random_sheets ("jumps:random_sheets")
FileOptionKey const	jumps::residue_pair_jump_file ("jumps:residue_pair_jump_file")
IntegerVectorOptionKey const	jumps::sheets ("jumps:sheets")
FileOptionKey const	jumps::topology_file ("jumps:topology_file")
BooleanOptionKey const	jumps::bb_moves ("jumps:bb_moves")
BooleanOptionKey const	jumps::no_wobble ("jumps:no_wobble")
BooleanOptionKey const	jumps::no_shear ("jumps:no_shear")
BooleanOptionKey const	jumps::no_sample_ss_jumps ("jumps:no_sample_ss_jumps")
IntegerOptionKey const	jumps::invrate_jump_move ("jumps:invrate_jump_move")
RealOptionKey const	jumps::chainbreak_weight_stage1 ("jumps:chainbreak_weight_stage1")
RealOptionKey const	jumps::chainbreak_weight_stage2 ("jumps:chainbreak_weight_stage2")
RealOptionKey const	jumps::chainbreak_weight_stage3 ("jumps:chainbreak_weight_stage3")
RealOptionKey const	jumps::chainbreak_weight_stage4 ("jumps:chainbreak_weight_stage4")
BooleanOptionKey const	jumps::ramp_chainbreaks ("jumps:ramp_chainbreaks")
RealOptionKey const	jumps::increase_chainbreak ("jumps:increase_chainbreak")
BooleanOptionKey const	jumps::overlap_chainbreak ("jumps:overlap_chainbreak")
RealOptionKey const	jumps::sep_switch_accelerate ("jumps:sep_switch_accelerate")
BooleanOptionKey const	jumps::dump_frags ("jumps:dump_frags")
IntegerOptionKey const	jumps::njumps ("jumps:njumps")
IntegerOptionKey const	jumps::max_strand_gap_allowed ("jumps:max_strand_gap_allowed")
RealOptionKey const	jumps::contact_score ("jumps:contact_score")
BooleanOptionKey const	jumps::filter_templates ("jumps:filter_templates")
BooleanOptionKey const	loops::loops ("loops")
StringOptionKey const	loops::cen_weights ("loops:cen_weights")
StringOptionKey const	loops::cen_patch ("loops:cen_patch")
FileOptionKey const	loops::input_pdb ("loops:input_pdb")
StringVectorOptionKey const	loops::loop_file ("loops:loop_file")
FileOptionKey const	loops::extended_loop_file ("loops:extended_loop_file")
FileOptionKey const	loops::mm_loop_file ("loops:mm_loop_file")
BooleanOptionKey const	loops::fix_natsc ("loops:fix_natsc")
BooleanOptionKey const	loops::refine_only ("loops:refine_only")
BooleanOptionKey const	loops::fast ("loops:fast")
FileOptionKey const	loops::vall_file ("loops:vall_file")
IntegerVectorOptionKey const	loops::frag_sizes ("loops:frag_sizes")
FileVectorOptionKey const	loops::frag_files ("loops:frag_files")
FileOptionKey const	loops::output_pdb ("loops:output_pdb")
BooleanOptionKey const	loops::debug ("loops:debug")
BooleanOptionKey const	loops::build_initial ("loops:build_initial")
BooleanOptionKey const	loops::extended ("loops:extended")
BooleanOptionKey const	loops::remove_extended_loops ("loops:remove_extended_loops")
BooleanOptionKey const	loops::idealize_after_loop_close ("loops:idealize_after_loop_close")
BooleanOptionKey const	loops::idealize_before_loop_close ("loops:idealize_before_loop_close")
IntegerOptionKey const	loops::select_best_loop_from ("loops:select_best_loop_from")
IntegerOptionKey const	loops::build_attempts ("loops:build_attempts")
IntegerOptionKey const	loops::grow_attempts ("loops:grow_attempts")
RealOptionKey const	loops::random_grow_loops_by ("loops:random_grow_loops_by")
BooleanOptionKey const	loops::accept_aborted_loops ("loops:accept_aborted_loops")
BooleanOptionKey const	loops::strict_loops ("loops:strict_loops")
BooleanOptionKey const	loops::superimpose_native ("loops:superimpose_native")
IntegerVectorOptionKey const	loops::build_specific_loops ("loops:build_specific_loops")
BooleanOptionKey const	loops::random_order ("loops:random_order")
BooleanOptionKey const	loops::build_all_loops ("loops:build_all_loops")
BooleanOptionKey const	loops::fa_closure_protocol ("loops:fa_closure_protocol")
RealOptionKey const	loops::combine_rate ("loops:combine_rate")
BooleanOptionKey const	loops::skip_initial_loop_build ("loops:skip_initial_loop_build")
StringOptionKey const	loops::remodel ("loops:remodel")
StringOptionKey const	loops::intermedrelax ("loops:intermedrelax")
StringOptionKey const	loops::refine ("loops:refine")
StringOptionKey const	loops::relax ("loops:relax")
BooleanOptionKey const	loops::final_clean_fastrelax ("loops:final_clean_fastrelax")
BooleanOptionKey const	loops::relax_with_foldtree ("loops:relax_with_foldtree")
RealOptionKey const	loops::constrain_rigid_segments ("loops:constrain_rigid_segments")
StringOptionKey const	loops::loopscores ("loops:loopscores")
BooleanOptionKey const	loops::timer ("loops:timer")
BooleanOptionKey const	loops::vicinity_sampling ("loops:vicinity_sampling")
RealOptionKey const	loops::vicinity_degree ("loops:vicinity_degree")
RealOptionKey const	loops::neighbor_dist ("loops:neighbor_dist")
IntegerOptionKey const	loops::kic_max_seglen ("loops:kic_max_seglen")
BooleanOptionKey const	loops::kic_recover_last ("loops:kic_recover_last")
BooleanOptionKey const	loops::kic_min_after_repack ("loops:kic_min_after_repack")