apply(Pose &pose) override | protocols::contact_map::ContactMap | virtual |
clear_info() | protocols::moves::Mover | inlinevirtual |
clone() const override | protocols::contact_map::ContactMap | virtual |
column_names_ | protocols::contact_map::ContactMap | private |
ContactMap() | protocols::contact_map::ContactMap | |
ContactMap(ContactMap const &) | protocols::contact_map::ContactMap | |
contacts_ | protocols::contact_map::ContactMap | private |
create() | protocols::moves::Mover | virtual |
distance_cutoff_ | protocols::contact_map::ContactMap | private |
distance_matrix_ | protocols::contact_map::ContactMap | private |
fill_contacts(core::Size region_begin, core::Size region_end, Pose const &pose) | protocols::contact_map::ContactMap | |
fill_contacts(core::Size region_begin, core::Size region_end, core::Size seqpos_ligand, Pose const &pose) | protocols::contact_map::ContactMap | |
fill_contacts(core::Size region1_begin, core::Size region1_end, core::Size region2_begin, core::Size region2_end, Pose const &pose) | protocols::contact_map::ContactMap | |
Filters_map typedef | protocols::moves::Mover | |
fresh_instance() const override | protocols::contact_map::ContactMap | virtual |
get_additional_output() | protocols::moves::Mover | virtual |
get_contact(core::Size row, core::Size col) | protocols::contact_map::ContactMap | |
get_current_job() const | protocols::moves::Mover | |
get_current_tag() const | protocols::moves::Mover | inline |
get_input_pose() const | protocols::moves::Mover | |
get_last_move_status() const | protocols::moves::Mover | |
get_name() const override | protocols::contact_map::ContactMap | virtual |
get_native_pose() const | protocols::moves::Mover | |
get_self_ptr() const | protocols::moves::Mover | inline |
get_self_ptr() | protocols::moves::Mover | inline |
get_self_weak_ptr() const | protocols::moves::Mover | inline |
get_self_weak_ptr() | protocols::moves::Mover | inline |
get_type() const | protocols::moves::Mover | inline |
info() | protocols::moves::Mover | inlinevirtual |
info() const | protocols::moves::Mover | inlinevirtual |
last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
models_per_file_ | protocols::contact_map::ContactMap | private |
Mover() | protocols::moves::Mover | |
Mover(std::string const &type_name) | protocols::moves::Mover | |
mover_is_unpublished() const | protocols::moves::Mover | virtual |
mover_name() | protocols::contact_map::ContactMap | static |
mover_provides_citation_info() const | protocols::moves::Mover | virtual |
n_poses_ | protocols::contact_map::ContactMap | private |
name() | protocols::moves::Mover | inlinestatic |
output_matrix_ | protocols::contact_map::ContactMap | private |
output_prefix_ | protocols::contact_map::ContactMap | private |
parse_my_tag(TagCOP, basic::datacache::DataMap &, protocols::filters::Filters_map const &, moves::Movers_map const &, Pose const &) override | protocols::contact_map::ContactMap | virtual |
parse_region_string(std::string, core::Size &, core::Size &, Pose const &) | protocols::contact_map::ContactMap | |
Pose typedef | protocols::moves::Mover | |
PoseCOP typedef | protocols::moves::Mover | |
provide_authorship_info_for_unpublished() const | protocols::moves::Mover | virtual |
provide_citation_info() const | protocols::moves::Mover | virtual |
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::contact_map::ContactMap | static |
register_options() | protocols::moves::Mover | inlinestatic |
reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
reset() | protocols::contact_map::ContactMap | |
reset_count_ | protocols::contact_map::ContactMap | private |
reset_status() | protocols::moves::Mover | |
row_format_ | protocols::contact_map::ContactMap | private |
row_names_ | protocols::contact_map::ContactMap | private |
set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
set_distance_cutoff(core::Real cutoff) | protocols::contact_map::ContactMap | inline |
set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_output_prefix(std::string prefix) | protocols::contact_map::ContactMap | inline |
set_type(std::string const &setting) | protocols::moves::Mover | inline |
show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
Strings typedef | protocols::moves::Mover | |
TagCOP typedef | protocols::moves::Mover | |
test_move(Pose &pose) override | protocols::contact_map::ContactMap | inlinevirtual |
type(const std::string &type_in) | protocols::moves::Mover | inline |
type() const | protocols::moves::Mover | inline |
write_to_file(std::string filename="") | protocols::contact_map::ContactMap | |
write_to_stream(std::ostream &output_stream) | protocols::contact_map::ContactMap | |
~ContactMap() override | protocols::contact_map::ContactMap | |