core::scoring::methods::DNA_DihedralEnergy Member List

This is the complete list of members for core::scoring::methods::DNA_DihedralEnergy, including all inherited members.

clone() const override	core::scoring::methods::DNA_DihedralEnergy	virtual
configure_from_options_system()	core::scoring::methods::DNA_DihedralEnergy
ContextDependentOneBodyEnergy(EnergyMethodCreatorOP)	core::scoring::methods::ContextDependentOneBodyEnergy
defines_dof_derivatives(pose::Pose const &) const override	core::scoring::methods::DNA_DihedralEnergy	inlinevirtual
defines_high_order_terms(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
defines_score_for_residue(conformation::Residue const &) const override	core::scoring::methods::DNA_DihedralEnergy	virtual
DNA_DihedralEnergy()	core::scoring::methods::DNA_DihedralEnergy
DNA_DihedralEnergy(DNA_DihedralEnergy const &src)	core::scoring::methods::DNA_DihedralEnergy
energy_method_is_unpublished() const	core::scoring::methods::EnergyMethod	virtual
energy_method_provides_citation_info() const	core::scoring::methods::EnergyMethod	virtual
EnergyMethod(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const	core::scoring::methods::EnergyMethod	virtual
eval_dof_derivative(id::DOF_ID const &, id::TorsionID const &tor_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights) const	core::scoring::methods::DNA_DihedralEnergy	virtual
eval_residue_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) const override	core::scoring::methods::DNA_DihedralEnergy	virtual
eval_residue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &, id::DOF_ID const &dof_id, id::TorsionID const &tor_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) const override	core::scoring::methods::DNA_DihedralEnergy	virtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_minimizing(pose::Pose &pose) const	core::scoring::methods::EnergyMethod	virtual
finalize_total_energy(pose::Pose &pose, ScoreFunction const &sfxn, EnergyMap &total_energy) const	core::scoring::methods::EnergyMethod	virtual
indicate_required_context_graphs(utility::vector1< bool > &) const override	core::scoring::methods::DNA_DihedralEnergy	virtual
method_type() const override	core::scoring::methods::ContextDependentOneBodyEnergy	virtual
minimize_in_whole_structure_context(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
OneBodyEnergy(EnergyMethodCreatorOP)	core::scoring::methods::OneBodyEnergy
parent typedef	core::scoring::methods::DNA_DihedralEnergy
potential_	core::scoring::methods::DNA_DihedralEnergy	private
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const	core::scoring::methods::EnergyMethod	virtual
provide_authorship_info_for_unpublished() const	core::scoring::methods::EnergyMethod	virtual
provide_citation_info() const	core::scoring::methods::EnergyMethod	virtual
requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) const	core::scoring::methods::OneBodyEnergy	virtual
requires_a_setup_for_scoring_for_residue_opportunity_during_minimization(pose::Pose const &pose) const	core::scoring::methods::OneBodyEnergy	virtual
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const	core::scoring::methods::EnergyMethod	virtual
residue_energy(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const override	core::scoring::methods::DNA_DihedralEnergy	virtual
residue_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap &emap) const	core::scoring::methods::OneBodyEnergy	virtual
score_chi_	core::scoring::methods::DNA_DihedralEnergy	private
score_delta_	core::scoring::methods::DNA_DihedralEnergy	private
score_types() const	core::scoring::methods::EnergyMethod	inline
set_score_types(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod	protected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data, basic::datacache::BasicDataCache &res_data_cache) const	core::scoring::methods::OneBodyEnergy	virtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &, ScoreFunction const &, kinematics::MinimizerMapBase const &, basic::datacache::BasicDataCache &, ResSingleMinimizationData &) const	core::scoring::methods::OneBodyEnergy	virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const	core::scoring::methods::OneBodyEnergy	virtual
core::scoring::methods::EnergyMethod::setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const	core::scoring::methods::EnergyMethod	virtual
show_additional_info(std::ostream &, pose::Pose &, bool) const	core::scoring::methods::EnergyMethod	virtual
update_residue_for_packing(pose::Pose &, Size resid) const	core::scoring::methods::EnergyMethod	virtual
use_extended_residue_energy_interface() const	core::scoring::methods::OneBodyEnergy	virtual
version() const override	core::scoring::methods::DNA_DihedralEnergy	inlinevirtual
~OneBodyEnergy() override	core::scoring::methods::OneBodyEnergy