aa_composition_setup_helpers_ | core::scoring::ScoringManager | mutableprivate |
add_memb_etable(std::string const &name, etable::MembEtableOP etable) | core::scoring::ScoringManager | |
atom_vdw_ | core::scoring::ScoringManager | mutableprivate |
carbohydrate_omega_preferences_function_ | core::scoring::ScoringManager | mutableprivate |
carbon_hbond_potential_ | core::scoring::ScoringManager | mutableprivate |
cen_disulfide_potential_ | core::scoring::ScoringManager | mutableprivate |
cen_hb_potential_ | core::scoring::ScoringManager | mutableprivate |
cen_rot_pair_potential_ | core::scoring::ScoringManager | mutableprivate |
CHI_energy_function_ | core::scoring::ScoringManager | mutableprivate |
cp_rep_map_byname_ | core::scoring::ScoringManager | mutableprivate |
create_aa_composition_energy_setup_instance(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
create_atomvdw_instance(std::string const &atom_type_set_name) | core::scoring::ScoringManager | privatestatic |
create_carbon_hbond_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_cenhbpotential_instance() | core::scoring::ScoringManager | privatestatic |
create_cenrotenvpair_instance() | core::scoring::ScoringManager | privatestatic |
create_centroid_disulfide_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_chi_energy_function_instance() | core::scoring::ScoringManager | privatestatic |
create_database_occsolene_instance(std::string const &atom_type_set_name, core::Real const &min_occ_energy) | core::scoring::ScoringManager | privatestatic |
create_ddp_lookup_instance() | core::scoring::ScoringManager | privatestatic |
create_disulfide_matching_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_dna_bform_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_dna_dihedralpotential_instance() | core::scoring::ScoringManager | privatestatic |
create_dna_directreadoutpotential_instance() | core::scoring::ScoringManager | privatestatic |
create_dna_envpairpotential_instance() | core::scoring::ScoringManager | privatestatic |
create_dna_torsion_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_dnabase_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_envpairpotential_instance() | core::scoring::ScoringManager | privatestatic |
create_etable_instance(etable::EtableOP table_in) | core::scoring::ScoringManager | privatestatic |
create_facts_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_file_contents_instance(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
create_fullatom_disulfide_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_genborn_instance() | core::scoring::ScoringManager | privatestatic |
create_generic_bonded_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_hxl_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_mainchain_scoretable_instance(core::chemical::mainchain_potential::MainchainScoreTableOP table_in) | core::scoring::ScoringManager | privatestatic |
create_memb_etable_instance(std::string const &table_id) | core::scoring::ScoringManager | privatestatic |
create_memb_etable_instance_silly(etable::MembEtableOP table_in) | core::scoring::ScoringManager | privatestatic |
create_membrane_data_instance() | core::scoring::ScoringManager | privatestatic |
create_membrane_fa_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_membrane_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_mhc_csv_contents(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
create_mhc_epitope_energy_setup_instance(std::string const &filename) | core::scoring::ScoringManager | static |
create_mhc_map_from_db(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
create_mhc_matrix_contents(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
create_mm_bondangle_library_instance() | core::scoring::ScoringManager | privatestatic |
create_mm_bondlength_library_instance() | core::scoring::ScoringManager | privatestatic |
create_mm_lj_energy_table_instance() | core::scoring::ScoringManager | privatestatic |
create_mm_lj_library_instance() | core::scoring::ScoringManager | privatestatic |
create_mm_torsion_library_instance() | core::scoring::ScoringManager | privatestatic |
create_multipole_elec_instance(methods::EnergyMethodOptions const &options) | core::scoring::ScoringManager | privatestatic |
create_netcharge_energy_setup_instance(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
create_nmer_pssm(std::string const &filename, core::Size nmer_length) | core::scoring::ScoringManager | privatestatic |
create_nmer_svm_aa_matrix(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
create_nmer_svm_rank(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
create_nvlookup_instance() | core::scoring::ScoringManager | privatestatic |
create_omega_preferences_function_instance() | core::scoring::ScoringManager | privatestatic |
create_omegatether_instance() | core::scoring::ScoringManager | privatestatic |
create_orbitals_lookup_instance() | core::scoring::ScoringManager | privatestatic |
create_p_aa_abego3_instance() | core::scoring::ScoringManager | privatestatic |
create_p_aa_instance() | core::scoring::ScoringManager | privatestatic |
create_p_aa_ss_instance() | core::scoring::ScoringManager | privatestatic |
create_pairE_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_point_water_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_poisson_boltzmann_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_proq_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_rama2b_instance() | core::scoring::ScoringManager | privatestatic |
create_rama_instance() | core::scoring::ScoringManager | privatestatic |
create_ramapp_instance() | core::scoring::ScoringManager | privatestatic |
create_rna_atomvdw_instance() | core::scoring::ScoringManager | privatestatic |
create_rna_chemshiftpotential_instance() | core::scoring::ScoringManager | privatestatic |
create_rna_dms_lowrespotential_instance() | core::scoring::ScoringManager | privatestatic |
create_rna_dms_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_rna_lowresolutionpotential_instance(std::string const &database_file) | core::scoring::ScoringManager | privatestatic |
create_rna_suitepotential_instance(bool const &calculate_suiteness_bonus, std::string const &suiteness_bonus) | core::scoring::ScoringManager | privatestatic |
create_rnp_lowrespairdistpotential_instance() | core::scoring::ScoringManager | privatestatic |
create_rnp_lowrespotential_instance() | core::scoring::ScoringManager | privatestatic |
create_rnp_lowresstackdata_instance() | core::scoring::ScoringManager | privatestatic |
create_sasa_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_secondarystructurepotential_instance() | core::scoring::ScoringManager | privatestatic |
create_sixdtransrotpotential_instance(std::string const &database_file) | core::scoring::ScoringManager | privatestatic |
create_smoothenvpair_instance() | core::scoring::ScoringManager | privatestatic |
create_split_unfolded_2body_potential_instance(std::string const &label_type, std::string const &value_type, std::string const &score_func_type) | core::scoring::ScoringManager | privatestatic |
create_svm_rosetta(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
create_tna_suitepotential_instance() | core::scoring::ScoringManager | privatestatic |
create_unfolded_state_potential_instance(std::string const &type) | core::scoring::ScoringManager | privatestatic |
create_vdw_tinker_potential_instance() | core::scoring::ScoringManager | privatestatic |
create_water_adduct_hbond_potential_instance() | core::scoring::ScoringManager | privatestatic |
DDP_lookup_table_ | core::scoring::ScoringManager | mutableprivate |
disulfide_matching_potential_ | core::scoring::ScoringManager | mutableprivate |
DNA_base_potential_ | core::scoring::ScoringManager | mutableprivate |
dna_dihedral_potential_ | core::scoring::ScoringManager | mutableprivate |
dna_dr_potential_ | core::scoring::ScoringManager | mutableprivate |
dna_env_pair_potential_ | core::scoring::ScoringManager | mutableprivate |
dna_torsion_potential_ | core::scoring::ScoringManager | mutableprivate |
dnabform_ | core::scoring::ScoringManager | mutableprivate |
energy_method(ScoreType const &t, methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
env_pair_potential_ | core::scoring::ScoringManager | mutableprivate |
etable(methods::EnergyMethodOptions const &options_in) const | core::scoring::ScoringManager | |
etable(etable::EtableOptions const &options_in) const | core::scoring::ScoringManager | |
etable(std::string const &etable_id) const | core::scoring::ScoringManager | |
etables_by_options_ | core::scoring::ScoringManager | mutableprivate |
fa_disulfide_potential_ | core::scoring::ScoringManager | mutableprivate |
factory_register(methods::EnergyMethodCreatorOP creator) | core::scoring::ScoringManager | |
facts_potential_ | core::scoring::ScoringManager | mutableprivate |
gen_born_potential_ | core::scoring::ScoringManager | mutableprivate |
generic_bonded_potential_ | core::scoring::ScoringManager | mutableprivate |
get_AtomVDW(std::string const &atom_type_set_name) const | core::scoring::ScoringManager | |
get_CarbonHBondPotential() const | core::scoring::ScoringManager | |
get_CenHBPotential() const | core::scoring::ScoringManager | |
get_CenRotEnvPairPotential() const | core::scoring::ScoringManager | |
get_CentroidDisulfidePotential() const | core::scoring::ScoringManager | |
get_CHIEnergyFunction() const | core::scoring::ScoringManager | |
get_cloned_aa_comp_setup_helpers(core::scoring::methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
get_cloned_mhc_epitope_setup_helpers(core::scoring::methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
get_cloned_netcharge_setup_helpers(core::scoring::methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
get_cp_rep_map_byname() const | core::scoring::ScoringManager | |
get_DatabaseOccSolEne(std::string const &atom_type_set_name, Real const &min_occ_energy) const | core::scoring::ScoringManager | |
get_DDPLookupTable() const | core::scoring::ScoringManager | |
get_DirectReadoutPotential() const | core::scoring::ScoringManager | |
get_DisulfideMatchingPotential() const | core::scoring::ScoringManager | |
get_DNA_BasePotential() const | core::scoring::ScoringManager | |
get_DNA_DihedralPotential() const | core::scoring::ScoringManager | |
get_DNA_EnvPairPotential() const | core::scoring::ScoringManager | |
get_DNABFormPotential() const | core::scoring::ScoringManager | |
get_DNATorsionPotential() const | core::scoring::ScoringManager | |
get_EnvPairPotential() const | core::scoring::ScoringManager | |
get_FACTSPotential() const | core::scoring::ScoringManager | |
get_FullatomDisulfidePotential() const | core::scoring::ScoringManager | |
get_GenBornPotential() const | core::scoring::ScoringManager | |
get_GenericBondedPotential() const | core::scoring::ScoringManager | |
get_HydroxylTorsionPotential() const | core::scoring::ScoringManager | |
get_LoopCloseSixDPotential(std::string const &database_file) const | core::scoring::ScoringManager | |
get_Membrane_FAPotential() const | core::scoring::ScoringManager | |
get_MembraneData() const | core::scoring::ScoringManager | |
get_MembranePotential() const | core::scoring::ScoringManager | |
get_mhc_csv_contents(std::string const &filename) const | core::scoring::ScoringManager | |
get_mhc_map_from_db(std::string const &filename) const | core::scoring::ScoringManager | |
get_mhc_matrix_contents(std::string const &filename) const | core::scoring::ScoringManager | |
get_MMBondAngleLibrary() const | core::scoring::ScoringManager | |
get_MMBondLengthLibrary() const | core::scoring::ScoringManager | |
get_MMLJEnergyTable() const | core::scoring::ScoringManager | |
get_MMLJLibrary() const | core::scoring::ScoringManager | |
get_MMTorsionLibrary() const | core::scoring::ScoringManager | |
get_MultipoleElecPotential(methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
get_nmer_pssm(std::string const &filename, core::Size nmer_length) const | core::scoring::ScoringManager | |
get_nmer_svm(std::string const &filename) const | core::scoring::ScoringManager | |
get_nmer_svm_aa_matrix(std::string const &filename) const | core::scoring::ScoringManager | |
get_nmer_svm_list_file_contents(std::string const &filename) const | core::scoring::ScoringManager | |
get_nmer_svm_rank(std::string const &filename) const | core::scoring::ScoringManager | |
get_nmer_svm_rank_list_file_contents(std::string const &filename) const | core::scoring::ScoringManager | |
get_NVLookupTable() const | core::scoring::ScoringManager | |
get_OmegaPreferencesFunction() const | core::scoring::ScoringManager | |
get_OmegaTether() const | core::scoring::ScoringManager | |
get_OrbitalsLookupTable() const | core::scoring::ScoringManager | |
get_P_AA() const | core::scoring::ScoringManager | |
get_P_AA_ABEGO3() const | core::scoring::ScoringManager | |
get_P_AA_ss() const | core::scoring::ScoringManager | |
get_PairEPotential() const | core::scoring::ScoringManager | |
get_PointWaterPotential() const | core::scoring::ScoringManager | |
get_PoissonBoltzmannPotential() const | core::scoring::ScoringManager | |
get_ProQPotential() const | core::scoring::ScoringManager | |
get_rama_prepro_mainchain_torsion_potential(core::chemical::ResidueTypeCOP restype, bool const use_polycubic_interpolation, bool const prepro_table) const | core::scoring::ScoringManager | |
get_Ramachandran() const | core::scoring::ScoringManager | |
get_Ramachandran2B() const | core::scoring::ScoringManager | |
get_Ramachandran2B_ptr() const | core::scoring::ScoringManager | |
get_Ramachandran_ptr() const | core::scoring::ScoringManager | |
get_RamaPrePro() const | core::scoring::ScoringManager | |
get_RNA_AtomVDW() const | core::scoring::ScoringManager | |
get_RNA_ChemicalShiftPotential() const | core::scoring::ScoringManager | |
get_RNA_DMS_LowResolutionPotential() const | core::scoring::ScoringManager | |
get_RNA_DMS_Potential() const | core::scoring::ScoringManager | |
get_RNA_LowResolutionPotential(std::string const &database_file) const | core::scoring::ScoringManager | |
get_rna_suite_potential(bool const &calculate_suiteness_bonus, std::string const &suiteness_bonus) const | core::scoring::ScoringManager | |
get_RNP_LowResPairDistPotential() const | core::scoring::ScoringManager | |
get_RNP_LowResPotential() const | core::scoring::ScoringManager | |
get_RNP_LowResStackData() const | core::scoring::ScoringManager | |
get_SASAPotential() const | core::scoring::ScoringManager | |
get_SecondaryStructurePotential() const | core::scoring::ScoringManager | |
get_SmoothEnvPairPotential() const | core::scoring::ScoringManager | |
get_SplitUnfoldedTwoBodyPotential(std::string const &label_type, std::string const &value_type, std::string const &score_func_type) const | core::scoring::ScoringManager | |
get_tna_suite_potential() const | core::scoring::ScoringManager | |
get_UnfoldedStatePotential(std::string const &type) const | core::scoring::ScoringManager | |
get_VdWTinkerPotential() const | core::scoring::ScoringManager | |
get_WaterAdductHBondPotential() const | core::scoring::ScoringManager | |
has_energy_method(ScoreType t) const | core::scoring::ScoringManager | |
hxl_tors_potential_ | core::scoring::ScoringManager | mutableprivate |
loop_close_six_d_potential_ | core::scoring::ScoringManager | mutableprivate |
make_partially_soft_etable(std::string const &name, etable::EtableOptions etable_options) const | core::scoring::ScoringManager | |
memb_etable(std::string const &table_id) const | core::scoring::ScoringManager | |
memb_etables_ | core::scoring::ScoringManager | mutableprivate |
membrane_fapotential_ | core::scoring::ScoringManager | mutableprivate |
membrane_potential_ | core::scoring::ScoringManager | mutableprivate |
method_creator_map_ | core::scoring::ScoringManager | private |
mhc_csv_db_contents_map_ | core::scoring::ScoringManager | mutableprivate |
mhc_epitope_setup_helpers_ | core::scoring::ScoringManager | mutableprivate |
mhc_matrix_contents_map_ | core::scoring::ScoringManager | mutableprivate |
mhc_sqlite_db_contents_map_ | core::scoring::ScoringManager | mutableprivate |
mm_bondangle_library_ | core::scoring::ScoringManager | mutableprivate |
mm_bondlength_library_ | core::scoring::ScoringManager | mutableprivate |
mm_lj_energy_table_ | core::scoring::ScoringManager | mutableprivate |
mm_lj_library_ | core::scoring::ScoringManager | mutableprivate |
mm_torsion_library_ | core::scoring::ScoringManager | mutableprivate |
mp_base_potential_ | core::scoring::ScoringManager | mutableprivate |
multipole_elec_potential_ | core::scoring::ScoringManager | mutableprivate |
netcharge_setup_helpers_ | core::scoring::ScoringManager | mutableprivate |
nmer_pssm_map_ | core::scoring::ScoringManager | mutableprivate |
nmer_svm_aa_matrix_map_ | core::scoring::ScoringManager | mutableprivate |
nmer_svm_list_file_contents_map_ | core::scoring::ScoringManager | mutableprivate |
nmer_svm_map_ | core::scoring::ScoringManager | mutableprivate |
nmer_svm_rank_list_file_contents_map_ | core::scoring::ScoringManager | mutableprivate |
nmer_svm_rank_map_ | core::scoring::ScoringManager | mutableprivate |
NV_lookup_table_ | core::scoring::ScoringManager | mutableprivate |
occ_hbond_sol_database_ | core::scoring::ScoringManager | mutableprivate |
omega_ | core::scoring::ScoringManager | mutableprivate |
orbitals_lookup_table_ | core::scoring::ScoringManager | mutableprivate |
p_aa_ | core::scoring::ScoringManager | mutableprivate |
p_aa_ss_ | core::scoring::ScoringManager | mutableprivate |
paa_abego3_ | core::scoring::ScoringManager | mutableprivate |
pairE_potential_ | core::scoring::ScoringManager | mutableprivate |
PB_potential_ | core::scoring::ScoringManager | mutableprivate |
ProQ_potential_ | core::scoring::ScoringManager | mutableprivate |
pwp_ | core::scoring::ScoringManager | mutableprivate |
rama2b_ | core::scoring::ScoringManager | mutableprivate |
rama_ | core::scoring::ScoringManager | mutableprivate |
rama_pp_ | core::scoring::ScoringManager | mutableprivate |
rama_prepro_mainchain_potentials_ | core::scoring::ScoringManager | mutableprivate |
rama_prepro_mainchain_potentials_beforeproline_ | core::scoring::ScoringManager | mutableprivate |
rna_atom_vdw_ | core::scoring::ScoringManager | mutableprivate |
rna_chemical_shift_potential_ | core::scoring::ScoringManager | mutableprivate |
rna_dms_low_resolution_potential_ | core::scoring::ScoringManager | mutableprivate |
rna_dms_potential_ | core::scoring::ScoringManager | mutableprivate |
rna_low_resolution_potential_ | core::scoring::ScoringManager | mutableprivate |
rna_suite_potential_ | core::scoring::ScoringManager | mutableprivate |
rnp_low_res_pair_dist_potential_ | core::scoring::ScoringManager | mutableprivate |
rnp_low_res_potential_ | core::scoring::ScoringManager | mutableprivate |
rnp_low_res_stack_data_ | core::scoring::ScoringManager | mutableprivate |
sasa_potential_ | core::scoring::ScoringManager | mutableprivate |
ScoringManager() | core::scoring::ScoringManager | private |
secondary_structure_potential_ | core::scoring::ScoringManager | mutableprivate |
smooth_env_pair_potential_ | core::scoring::ScoringManager | mutableprivate |
sutbp_ | core::scoring::ScoringManager | mutableprivate |
tna_suite_potential_ | core::scoring::ScoringManager | mutableprivate |
unf_state_ | core::scoring::ScoringManager | mutableprivate |
utility::SingletonBase< ScoringManager > class | core::scoring::ScoringManager | friend |
vdw_tinker_potential_ | core::scoring::ScoringManager | mutableprivate |
water_adduct_hbond_potential_ | core::scoring::ScoringManager | mutableprivate |
~ScoringManager() | core::scoring::ScoringManager | private |