add_pose(core::pose::PoseCOP pose) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
add_rotamer_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
add_rotamer_constraints(core::pose::Pose &pose, core::Size seqnum, core::conformation::ResidueOP cur_rot) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
add_rotamer_to_rotamer_set(core::pose::Pose const &pose, core::pack::rotamer_set::RotamerSet &rotamer_set, core::conformation::ResidueOP cur_rot) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
alter_rotamer_set(core::pose::Pose const &pose, core::scoring::ScoreFunction const &, core::pack::task::PackerTask const &, utility::graph::GraphCOP, core::pack::rotamer_set::RotamerSet &rotamer_set) override | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | virtual |
alter_rotamer_set_from_db(core::pose::Pose const &pose, core::pack::task::PackerTask const &ptask, core::pack::rotamer_set::RotamerSet &rotamer_set) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
alter_rotamer_set_from_pdb(core::pose::Pose const &pose, core::pack::task::PackerTask const &ptask, core::pack::rotamer_set::RotamerSet &rotamer_set) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
ccd_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
clone() const override | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | virtual |
copy_rotamer_matrix(rot_matrix const &rm) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
db_file_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
debug_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
fill_rotamer_matrix_from_db_file() | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
GraphCOP typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
increase_packer_residue_radius(pose::Pose const &pose, task::PackerTaskCOP the_task, core::Size residue_in) const | core::pack::rotamer_set::RotamerSetOperation | virtual |
initialize_from_command_line() | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
is_residue_allowed(core::chemical::ResidueType const &restype, core::pack::task::ResidueLevelTask const &rtask) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
PackerTask typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
PackerTaskCOP typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
Pose typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
poses_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
Real typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
resi_vec_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
ROT2res(ROT rot, core::pose::Pose const &pose) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
Rotamers typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
RotamerSet typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
RotamerSetOperation() | core::pack::rotamer_set::RotamerSetOperation | |
RotamerSetOperationOP typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
SampleAtAlignedpositions_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
SampleRotamersFromPDB_RotamerSetOperation() | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
SampleRotamersFromPDB_RotamerSetOperation(bool add_rot, utility::vector1< core::Size > SampleAtAlignedpositions, bool d, bool ccd, std::string file_name) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
ScoreFunction typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
~RotamerSetOperation() override | core::pack::rotamer_set::RotamerSetOperation | |
~SampleRotamersFromPDB_RotamerSetOperation() override | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |