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protocols::stepwise::modeler::StepWiseConnectionSampler Member List

This is the complete list of members for protocols::stepwise::modeler::StepWiseConnectionSampler, including all inherited members.

add_residue_alternative_set(sampler::copy_dofs::ResidueAlternativeSet const &residue_alternative_set)protocols::stepwise::modeler::StepWiseConnectionSampler
apply(core::pose::Pose &pose_to_visualize) overrideprotocols::stepwise::modeler::StepWiseConnectionSamplervirtual
protocols::moves::MoverForPoseList::apply(utility::vector1< core::pose::PoseOP > &pose_list)protocols::moves::MoverForPoseListvirtual
protocols::moves::MoverForPoseList::apply(utility::vector1< core::pose::PoseOP > &pose_list, core::pose::Pose &viewer_pose)protocols::moves::MoverForPoseListvirtual
base_centroid_checker_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
check_working_parameters(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
clusterer_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
count_data_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
create()protocols::moves::Movervirtual
figure_out_reference_res(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
figure_out_reference_res_with_rigid_body_rotamer(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_full_bond_sampler()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_max_ntries()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
get_moving_rsd_list() const protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
get_name() const overrideprotocols::stepwise::modeler::StepWiseConnectionSamplervirtual
get_native_pose() const protocols::moves::Mover
get_num_pose_kept()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
get_pose_list()protocols::stepwise::modeler::StepWiseConnectionSampler
get_rsd_alternatives_rotamer()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize_carbohydrate_bond_sampler(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_checkers(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_euler_angle_grid_parameters()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_full_rigid_body_sampler()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_generic_polymer_bond_sampler(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_ligand_bond_sampler(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_moving_residue_pose_list(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_pose(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_pose_level_screeners(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_protein_bond_sampler(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_protein_packer(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_residue_level_screeners(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_rigid_body_rotamer()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_rna_bond_sampler(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_sampler(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_screeners(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_tna_bond_sampler(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_useful_info(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
initialize_xyz_grid_parameters()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
input_streams_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
kic_modeler_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
master_packer_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
max_distance_squared_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_is_unpublished() const protocols::moves::Movervirtual
mover_provides_citation_info() const protocols::moves::Movervirtual
MoverForPoseList()protocols::moves::MoverForPoseList
moving_ligand_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
moving_partition_res_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
moving_res_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
moving_res_base_stub_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
moving_res_list_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
name()protocols::moves::Moverinlinestatic
options_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
pose_list_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
PoseCOP typedefprotocols::moves::Mover
presample_virtual_sugars(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
protein_atr_rep_screening_pose_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
protein_ccd_closers_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
protein_ccd_poses_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
protein_connection_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
protein_cutpoints_closed_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
provide_authorship_info_for_unpublished() const protocols::moves::Movervirtual
provide_citation_info() const protocols::moves::Movervirtual
reference_res_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
residue_alternative_sets_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rigid_body_modeler_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rigid_body_rotamer_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rna_atr_rep_checker_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rna_chain_break_gap_sizes_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rna_chain_closable_geometry_checkers_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rna_chain_closure_checkers_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rna_cutpoints_closed_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rna_five_prime_chain_breaks_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rna_three_prime_chain_breaks_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
rna_virt_sugar_atr_rep_checker_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
sampler_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
scorefxn_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
screeners_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
screening_pose_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_input_streams(utility::vector1< protein::InputStreamWithResidueInfoOP > const &input_streams)protocols::stepwise::modeler::StepWiseConnectionSamplerinline
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_master_packer(packer::StepWiseMasterPackerOP master_packer)protocols::stepwise::modeler::StepWiseConnectionSamplerinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_options(options::StepWiseModelerOptionsCOP options)protocols::stepwise::modeler::StepWiseConnectionSampler
set_pose_list(utility::vector1< core::pose::PoseOP > &pose_list)protocols::stepwise::modeler::StepWiseConnectionSampler
set_scorefxn(core::scoring::ScoreFunctionCOP const &scorefxn)protocols::stepwise::modeler::StepWiseConnectionSamplerinline
set_type(std::string const &setting)protocols::moves::Moverinline
set_user_input_VDW_bin_checker(rna::checker::RNA_VDW_BinCheckerOP const &user_input_VDW_bin_checker)protocols::stepwise::modeler::StepWiseConnectionSampler
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
StepWiseConnectionSampler()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
StepWiseConnectionSampler(working_parameters::StepWiseWorkingParametersCOP &working_parameters_)protocols::stepwise::modeler::StepWiseConnectionSampler
Strings typedefprotocols::moves::Mover
tag_definition_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
truly_floating_base()protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
user_input_VDW_bin_checker_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
VDW_bin_checker_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
virt_sugar_atr_rep_screen_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
virt_sugar_screening_pose_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
which_residue_alternative_set_is_moving_residue() const protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
working_parameters_protocols::stepwise::modeler::StepWiseConnectionSamplerprivate
~MoverForPoseList() overrideprotocols::moves::MoverForPoseList
~StepWiseConnectionSampler() overrideprotocols::stepwise::modeler::StepWiseConnectionSampler
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