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Rosetta
2020.11
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#include <protocols/denovo_design/architects/StrandArchitect.hh>
#include <protocols/fldsgn/topology/StrandPairing.hh>
#include <core/pose/Pose.fwd.hh>
Classes | |
class | protocols::denovo_design::components::SheetDB |
class used to create/manipulate a database of sheets using a list of pdb files More... | |
Namespaces | |
protocols | |
The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP. | |
protocols::denovo_design | |
protocols::denovo_design::components | |
Typedefs | |
typedef utility::vector1 < core::pose::PoseCOP > | protocols::denovo_design::components::SheetList |
this is the actual map used to store the sheets More... | |
typedef std::map< std::string, SheetList > | protocols::denovo_design::components::MapByLengths |
typedef std::map< std::string, MapByLengths > | protocols::denovo_design::components::MapByOrientations |
typedef std::map< core::Size, MapByOrientations > | protocols::denovo_design::components::MapByStrands |
Functions | |
core::Size | protocols::denovo_design::components::num_strands (core::pose::Pose const &pose) |
counts number of strands based on number of jumps. Pose must be a disconnected sheet More... | |
std::pair< std::string, std::string > | protocols::denovo_design::components::find_orientations_and_lengths (core::pose::Pose const &pose) |
gets a pair of strings, which refer to orientations, and lengths/shifts. Pose secstruct MUST be set More... | |
std::string | protocols::denovo_design::components::make_strand_info_str (architects::Lengths const &lengths, RegisterShifts const &shifts) |
creates a string key for lengths/shifts based on the given vectors for strand lengths and register shifts More... | |
core::pose::PoseOP | protocols::denovo_design::components::reverse_chains (core::pose::Pose const &pose) |
int | protocols::denovo_design::components::add_to_pose (core::pose::PoseOP newpose, core::pose::Pose const &pose, core::Size s_start, core::Size s_stop) |
utility::vector1 < core::pose::PoseOP > | protocols::denovo_design::components::extract_sheets_from_strandlist (utility::vector1< core::pose::PoseOP > const &strands, core::Size const nstrands) |
utility::vector1 < core::pose::PoseOP > | protocols::denovo_design::components::extract_sheets_from_pose (core::pose::Pose const &pose, protocols::fldsgn::topology::StrandPairings const &spairs, protocols::fldsgn::topology::SS_Info2 const &ss_info, bool const idealize) |
std::string | protocols::denovo_design::components::reverse_orientations (std::string const &orient) |
utility::vector1< bool > | protocols::denovo_design::components::parse_orientations (std::string const &orientations) |
std::pair< utility::vector1 < core::Size > , utility::vector1< int > > | protocols::denovo_design::components::parse_lengths (std::string const &lengths) |
std::string | protocols::denovo_design::components::reverse_lengths (std::string const &orientations, std::string const &lengths) |
std::string const & | protocols::denovo_design::components::choose_canonical (std::string const &l1, std::string const &l2) |
std::pair< std::string, std::string > | protocols::denovo_design::components::canonicalize (std::string const &orientations, std::string const &lengths) |