apply(Pose &pose) override | protocols::forge::remodel::RemodelDesignMover | virtual |
archived_starting_task_ | protocols::forge::remodel::RemodelDesignMover | private |
check_state() | protocols::forge::remodel::RemodelDesignMover | |
clear_info() | protocols::moves::Mover | inlinevirtual |
clone() const override | protocols::forge::remodel::RemodelDesignMover | virtual |
create() | protocols::moves::Mover | virtual |
Filters_map typedef | protocols::moves::Mover | |
find_disulfides_in_the_neighborhood(Pose &pose, utility::vector1< std::pair< Size, Size > > &disulf_partners, const core::Energy &match_rt_limit, const Size &rosetta_scripts_min_loop, const bool &rosetta_scripts_include_current_ds, const bool &rosetta_scripts_keep_current_ds, const bool &relax_bb_for_disulf, const bool &use_match_rt, const bool &use_disulf_fa_score, const core::Real disulf_fa_max) | protocols::forge::remodel::RemodelDesignMover | |
fresh_instance() const override | protocols::forge::remodel::RemodelDesignMover | virtual |
get_additional_output() | protocols::moves::Mover | virtual |
get_current_job() const | protocols::moves::Mover | |
get_current_tag() const | protocols::moves::Mover | inline |
get_input_pose() const | protocols::moves::Mover | |
get_last_move_status() const | protocols::moves::Mover | |
get_name() const override | protocols::forge::remodel::RemodelDesignMover | virtual |
get_native_pose() const | protocols::moves::Mover | |
get_self_ptr() const | protocols::moves::Mover | inline |
get_self_ptr() | protocols::moves::Mover | inline |
get_self_weak_ptr() const | protocols::moves::Mover | inline |
get_self_weak_ptr() | protocols::moves::Mover | inline |
get_type() const | protocols::moves::Mover | inline |
info() | protocols::moves::Mover | inlinevirtual |
info() const | protocols::moves::Mover | inlinevirtual |
last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
make_disulfide(Pose &pose, utility::vector1< std::pair< Size, Size > > &disulf_partners, core::kinematics::MoveMapOP mm) | protocols::forge::remodel::RemodelDesignMover | |
make_disulfide_fast(Pose &pose, utility::vector1< std::pair< Size, Size > > &disulf_partners) | protocols::forge::remodel::RemodelDesignMover | |
mode1_1_packertask(Pose &pose) | protocols::forge::remodel::RemodelDesignMover | |
mode1_packertask(Pose &pose) | protocols::forge::remodel::RemodelDesignMover | |
mode2_packertask(Pose &pose) | protocols::forge::remodel::RemodelDesignMover | |
mode3_packertask(Pose &pose) | protocols::forge::remodel::RemodelDesignMover | |
mode4_packertask(Pose &pose) | protocols::forge::remodel::RemodelDesignMover | |
mode5_packertask(Pose &pose) | protocols::forge::remodel::RemodelDesignMover | |
mode6_packertask(Pose &pose) | protocols::forge::remodel::RemodelDesignMover | |
MoveMap typedef | protocols::forge::remodel::RemodelDesignMover | |
Mover() | protocols::moves::Mover | |
Mover(std::string const &type_name) | protocols::moves::Mover | |
mover_is_unpublished() const | protocols::moves::Mover | virtual |
mover_provides_citation_info() const | protocols::moves::Mover | virtual |
MoverOP typedef | protocols::forge::remodel::RemodelDesignMover | |
name() | protocols::moves::Mover | inlinestatic |
non_default_positions_ | protocols::forge::remodel::RemodelDesignMover | private |
PackerTask typedef | protocols::forge::remodel::RemodelDesignMover | |
PackerTaskOP typedef | protocols::forge::remodel::RemodelDesignMover | |
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
Pose typedef | protocols::forge::remodel::RemodelDesignMover | |
PoseCOP typedef | protocols::moves::Mover | |
provide_authorship_info_for_unpublished() const | protocols::moves::Mover | virtual |
provide_citation_info() const | protocols::moves::Mover | virtual |
Real typedef | protocols::forge::remodel::RemodelDesignMover | |
reduce_task(Pose &pose, PackerTaskOP &task, bool core, bool boundary, bool surface) | protocols::forge::remodel::RemodelDesignMover | |
register_options() | protocols::moves::Mover | inlinestatic |
reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
remodel_data_ | protocols::forge::remodel::RemodelDesignMover | private |
RemodelData typedef | protocols::forge::remodel::RemodelDesignMover | |
RemodelDesignMover() | protocols::forge::remodel::RemodelDesignMover | |
RemodelDesignMover(RemodelData const &remodel_data, RemodelWorkingSet const &working_model, ScoreFunctionOP const &sfxn) | protocols::forge::remodel::RemodelDesignMover | |
RemodelWorkingSet typedef | protocols::forge::remodel::RemodelDesignMover | |
reset_status() | protocols::moves::Mover | |
run_calculator(core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) | protocols::forge::remodel::RemodelDesignMover | private |
score_fxn_ | protocols::forge::remodel::RemodelDesignMover | private |
scorefunction(ScoreFunctionOP const &sfxn) | protocols::forge::remodel::RemodelDesignMover | |
ScoreFunction typedef | protocols::forge::remodel::RemodelDesignMover | |
ScoreFunctionOP typedef | protocols::forge::remodel::RemodelDesignMover | |
set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_state(std::string state_tag) | protocols::forge::remodel::RemodelDesignMover | |
set_type(std::string const &setting) | protocols::moves::Mover | inline |
show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
Size typedef | protocols::forge::remodel::RemodelDesignMover | |
state_ | protocols::forge::remodel::RemodelDesignMover | private |
Strings typedef | protocols::moves::Mover | |
Super typedef | protocols::forge::remodel::RemodelDesignMover | private |
TagCOP typedef | protocols::moves::Mover | |
task() | protocols::forge::remodel::RemodelDesignMover | |
test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
type(const std::string &type_in) | protocols::moves::Mover | inline |
type() const | protocols::moves::Mover | inline |
working_model_ | protocols::forge::remodel::RemodelDesignMover | private |
~RemodelDesignMover() override | protocols::forge::remodel::RemodelDesignMover | |