add_constraints_to_pose(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx, bool accept_blocks_missing_header) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
add_constraints_to_pose_for_block_without_clearing_and_header_processing(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
add_pregenerated_constraints_to_pose(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
allowed_res_name3_at_position(core::pose::Pose const &pose, core::Size const seqpos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
apply(core::pose::Pose &pose) | protocols::forge::remodel::RemodelEnzdesCstModule | |
backbone_only_ | protocols::forge::remodel::RemodelEnzdesCstModule | private |
blueprint_cst_definition(core::pose::Pose &pose) | protocols::forge::remodel::RemodelEnzdesCstModule | |
clear_active_pose_constraints_for_block(core::pose::Pose &pose, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
contains_position(core::pose::Pose const &pose, core::Size const seqpos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
cst_pairs_ | protocols::toolbox::match_enzdes_util::EnzConstraintIO | protected |
cstblocksize_ | protocols::forge::remodel::RemodelEnzdesCstModule | private |
enable_constraint_scoreterms(core::scoring::ScoreFunctionOP scorefxn) | protocols::forge::remodel::RemodelEnzdesCstModule | |
enz_cst_params(core::Size block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
enz_cst_params_missing_in_pose(core::pose::Pose const &pose) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
enz_cst_params_size() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
EnzConstraintIO(core::chemical::ResidueTypeSetCOP src_restype_set) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
get_self_ptr() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
get_self_ptr() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
get_self_weak_ptr() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
get_self_weak_ptr() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
initialize_with_mcfi_list(utility::vector1< MatchConstraintFileInfoListOP > mcfi_list_vec) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
is_backbone_only_cst(core::pose::Pose const &pose, core::Size const seqpos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
mcfi_list(core::Size block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
mcfi_lists_size() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
num_mcfi_lists() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
ordered_constrained_positions(core::pose::Pose const &pose) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
process_pdb_header(core::pose::Pose &pose, bool accept_missing_blocks) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
read_enzyme_cstfile(std::string fname) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
remap_resid(core::id::SequenceMapping const &smap) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
remodel_data_ | protocols::forge::remodel::RemodelEnzdesCstModule | private |
RemodelEnzdesCstModule(protocols::forge::remodel::RemodelData external_data) | protocols::forge::remodel::RemodelEnzdesCstModule | |
remove_constraints_from_pose(core::pose::Pose &pose, bool const keep_covalent, bool const fail_on_constraints_missing) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
remove_constraints_from_pose_for_block(core::pose::Pose &pose, core::Size cst_block, bool const fail_on_constraints_missing) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
remove_position_from_template_res(core::pose::Pose &pose, core::Size pos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
remove_position_from_template_res_for_block(core::pose::Pose &pose, core::Size pos, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
scorefxn_ | protocols::forge::remodel::RemodelEnzdesCstModule | private |
set_external_position_for_resA_in_parameter_block(core::Size cst_block, core::Size respos) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
set_external_position_for_resB_in_parameter_block(core::Size cst_block, core::Size respos) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
set_position_for_missing_res_in_parameter_block(core::pose::Pose &pose, core::Size cst_block, core::Size respos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
show_cst_definitions() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
target_downstream_res() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
update_pdb_remarks_for_backbone_params(core::pose::Pose &pose) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
use_all_blocks() | protocols::forge::remodel::RemodelEnzdesCstModule | |
use_backbone_only_blocks() | protocols::forge::remodel::RemodelEnzdesCstModule | |
~EnzConstraintIO() override | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
~RemodelEnzdesCstModule() override | protocols::forge::remodel::RemodelEnzdesCstModule | |