atom(Size const n) const override | core::scoring::constraints::AtomPairConstraint | inlinevirtual |
atom1() const | core::scoring::constraints::AtomPairConstraint | inline |
atom1(AtomID newid) const | core::scoring::constraints::AtomPairConstraint | protected |
atom1_ | core::scoring::constraints::AtomPairConstraint | mutableprivate |
atom2() const | core::scoring::constraints::AtomPairConstraint | inline |
atom2(AtomID newid) const | core::scoring::constraints::AtomPairConstraint | protected |
atom2_ | core::scoring::constraints::AtomPairConstraint | mutableprivate |
AtomID typedef | core::scoring::constraints::Constraint | |
AtomPairConstraint() | core::scoring::constraints::AtomPairConstraint | |
AtomPairConstraint(AtomID const &a1, AtomID const &a2, core::scoring::func::FuncOP func, ScoreType scoretype=atom_pair_constraint) | core::scoring::constraints::AtomPairConstraint | |
AtomPairConstraint(AtomPairConstraint const &src) | core::scoring::constraints::AtomPairConstraint | protected |
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &) | core::scoring::constraints::Constraint | virtual |
clone() const override | core::scoring::constraints::AtomPairConstraint | virtual |
clone(func::FuncOP func) const override | core::scoring::constraints::AtomPairConstraint | virtual |
Constraint(ScoreType const &t) | core::scoring::constraints::Constraint | |
dfunc(Real const theta) const | core::scoring::constraints::AtomPairConstraint | private |
dist(pose::Pose const &pose) const override | core::scoring::constraints::AtomPairConstraint | virtual |
dist(core::scoring::func::XYZ_Func const &xyz) const override | core::scoring::constraints::AtomPairConstraint | virtual |
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp) const override | core::scoring::constraints::AtomPairConstraint | virtual |
fill_f1_f2(AtomID const &atom, core::scoring::func::XYZ_Func const &xyz, Vector &F1, Vector &F2, EnergyMap const &weights) const override | core::scoring::constraints::AtomPairConstraint | virtual |
func(Real const theta) const | core::scoring::constraints::AtomPairConstraint | private |
func_ | core::scoring::constraints::AtomPairConstraint | private |
get_func() const override | core::scoring::constraints::AtomPairConstraint | virtual |
natoms() const override | core::scoring::constraints::AtomPairConstraint | inlinevirtual |
operator!=(Constraint const &other) const | core::scoring::constraints::Constraint | |
operator==(Constraint const &other) const override | core::scoring::constraints::AtomPairConstraint | virtual |
read_constraint(std::istream &, core::pose::Pose const &) | core::scoring::constraints::Constraint | virtual |
read_data(std::istream &) | core::scoring::constraints::Constraint | virtual |
read_def(std::istream &in, pose::Pose const &pose, func::FuncFactory const &func_factory) override | core::scoring::constraints::AtomPairConstraint | virtual |
remap_resid(core::id::SequenceMapping const &seqmap) const override | core::scoring::constraints::AtomPairConstraint | virtual |
remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map=nullptr) const override | core::scoring::constraints::AtomPairConstraint | virtual |
residues() const | core::scoring::constraints::Constraint | virtual |
same_type_as_me(Constraint const &other) const override | core::scoring::constraints::AtomPairConstraint | virtual |
score(Vector const &xyz1, Vector const &xyz2) const | core::scoring::constraints::AtomPairConstraint | |
score(core::scoring::func::XYZ_Func const &xyz, EnergyMap const &, EnergyMap &emap) const override | core::scoring::constraints::AtomPairConstraint | virtual |
score(pose::Pose const &pose) const override | core::scoring::constraints::AtomPairConstraint | virtual |
core::scoring::constraints::Constraint::score(pose::Pose const &pose, EnergyMap const &weights) const | core::scoring::constraints::Constraint | virtual |
score_type() const | core::scoring::constraints::Constraint | inline |
set_func(func::FuncOP setting) | core::scoring::constraints::AtomPairConstraint | protected |
setup_for_derivatives(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | virtual |
setup_for_scoring(func::XYZ_Func const &, ScoreFunction const &) const override | core::scoring::constraints::AtomPairConstraint | virtual |
show(std::ostream &out) const override | core::scoring::constraints::AtomPairConstraint | virtual |
show_def(std::ostream &out, pose::Pose const &pose) const override | core::scoring::constraints::AtomPairConstraint | virtual |
show_violations(std::ostream &out, pose::Pose const &pose, Size verbose_level, Real threshold=1) const override | core::scoring::constraints::AtomPairConstraint | virtual |
steal_def(pose::Pose const &) | core::scoring::constraints::Constraint | virtual |
to_string() const | core::scoring::constraints::Constraint | |
type() const override | core::scoring::constraints::AtomPairConstraint | inlinevirtual |
~Constraint() override | core::scoring::constraints::Constraint | |