abego_ | protocols::forge::components::VarLengthBuild | private |
add_rcg(RemodelConstraintGeneratorOP rcg) | protocols::forge::components::VarLengthBuild | |
add_setup_mover(moves::MoverOP mover_in) | protocols::forge::components::VarLengthBuild | |
add_user_provided_mover(moves::MoverOP mover_in) | protocols::forge::components::VarLengthBuild | |
apply(Pose &pose) override | protocols::forge::components::VarLengthBuild | virtual |
BIOPConstIterator typedef | protocols::forge::components::VarLengthBuild | |
BuildManager typedef | protocols::forge::components::VarLengthBuild | |
cache_fragments() const | protocols::forge::components::VarLengthBuild | inline |
cache_fragments(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
cache_fragments_ | protocols::forge::components::VarLengthBuild | private |
centroid_build(Pose &pose) | protocols::forge::components::VarLengthBuild | protectedvirtual |
clear_fragments() | protocols::forge::components::VarLengthBuild | |
clear_info() | protocols::moves::Mover | inlinevirtual |
clear_rcgs() | protocols::forge::components::VarLengthBuild | |
clear_setup_movers() | protocols::forge::components::VarLengthBuild | |
clear_user_provided_movers() | protocols::forge::components::VarLengthBuild | |
clone() const override | protocols::forge::components::VarLengthBuild | virtual |
ConstantLengthFragSetOP typedef | protocols::forge::components::VarLengthBuild | |
create() | protocols::moves::Mover | virtual |
Filters_map typedef | protocols::moves::Mover | |
frag1_ | protocols::forge::components::VarLengthBuild | private |
frag3_ | protocols::forge::components::VarLengthBuild | private |
frag9_ | protocols::forge::components::VarLengthBuild | private |
fragfull_ | protocols::forge::components::VarLengthBuild | private |
fragments_picked_ | protocols::forge::components::VarLengthBuild | private |
FrameList typedef | protocols::forge::components::VarLengthBuild | |
fresh_instance() const override | protocols::forge::components::VarLengthBuild | virtual |
get_additional_output() | protocols::moves::Mover | virtual |
get_current_job() const | protocols::moves::Mover | |
get_current_tag() const | protocols::moves::Mover | inline |
get_input_pose() const | protocols::moves::Mover | |
get_last_move_status() const | protocols::moves::Mover | |
get_name() const override | protocols::forge::components::VarLengthBuild | virtual |
get_native_pose() const | protocols::moves::Mover | |
get_self_ptr() const | protocols::moves::Mover | inline |
get_self_ptr() | protocols::moves::Mover | inline |
get_self_weak_ptr() const | protocols::moves::Mover | inline |
get_self_weak_ptr() | protocols::moves::Mover | inline |
get_type() const | protocols::moves::Mover | inline |
ignore_cmdline_enzdes_cstfile(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
ignore_cmdline_enzdes_cstfile_ | protocols::forge::components::VarLengthBuild | private |
info() | protocols::moves::Mover | inlinevirtual |
info() const | protocols::moves::Mover | inlinevirtual |
Interval typedef | protocols::forge::components::VarLengthBuild | |
last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
loop_mover_fold_tree_constant(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
loop_mover_fold_tree_constant_ | protocols::forge::components::VarLengthBuild | private |
loop_mover_instance(loops::LoopsOP const loops, MoveMap const &false_mm) | protocols::forge::components::VarLengthBuild | protectedvirtual |
loop_mover_str() const | protocols::forge::components::VarLengthBuild | inline |
loop_mover_str(String const &str) | protocols::forge::components::VarLengthBuild | inline |
loop_mover_str_ | protocols::forge::components::VarLengthBuild | private |
Loops typedef | protocols::forge::components::VarLengthBuild | |
manager() const | protocols::forge::components::VarLengthBuild | inline |
manager(BuildManager const &manager) | protocols::forge::components::VarLengthBuild | |
manager_ | protocols::forge::components::VarLengthBuild | private |
max_linear_chainbreak() const | protocols::forge::components::VarLengthBuild | inline |
max_linear_chainbreak(Real const tol) | protocols::forge::components::VarLengthBuild | inline |
max_linear_chainbreak_ | protocols::forge::components::VarLengthBuild | private |
MoveMap typedef | protocols::forge::components::VarLengthBuild | |
Mover() | protocols::moves::Mover | |
Mover(std::string const &type_name) | protocols::moves::Mover | |
mover_is_unpublished() const | protocols::moves::Mover | virtual |
mover_provides_citation_info() const | protocols::moves::Mover | virtual |
MoverOP typedef | protocols::forge::components::VarLengthBuild | |
name() | protocols::moves::Mover | inlinestatic |
new_secondary_structure_override() const | protocols::forge::components::VarLengthBuild | inline |
new_secondary_structure_override(String const &str) | protocols::forge::components::VarLengthBuild | inline |
new_secondary_structure_override_ | protocols::forge::components::VarLengthBuild | private |
new_sequence_override() const | protocols::forge::components::VarLengthBuild | inline |
new_sequence_override(String const &str) | protocols::forge::components::VarLengthBuild | inline |
new_sequence_override_ | protocols::forge::components::VarLengthBuild | private |
num_fragpick() const | protocols::forge::components::VarLengthBuild | inline |
num_fragpick(Size const num) | protocols::forge::components::VarLengthBuild | inline |
num_fragpick_ | protocols::forge::components::VarLengthBuild | private |
operator=(VarLengthBuild const &rval) | protocols::forge::components::VarLengthBuild | private |
OrderedFragSetOP typedef | protocols::forge::components::VarLengthBuild | |
Original2Modified typedef | protocols::forge::components::VarLengthBuild | |
original_sequence() | protocols::forge::components::VarLengthBuild | inline |
original_sequence(String const &seq) | protocols::forge::components::VarLengthBuild | inline |
original_sequence_ | protocols::forge::components::VarLengthBuild | private |
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
pick_all_fragments(String const &complete_ss, String const &complete_aa, utility::vector1< String > const &complete_abego, Interval const &interval, Size const n_frags) | protocols::forge::components::VarLengthBuild | protected |
pick_fragments(String const &complete_ss, String const &complete_aa, utility::vector1< String > const &complete_abego, Interval const &interval, Size const frag_length, Size const n_frags) | protocols::forge::components::VarLengthBuild | protected |
Pose typedef | protocols::forge::components::VarLengthBuild | |
PoseCOP typedef | protocols::moves::Mover | |
Positions typedef | protocols::forge::components::VarLengthBuild | |
provide_authorship_info_for_unpublished() const | protocols::moves::Mover | virtual |
provide_citation_info() const | protocols::moves::Mover | virtual |
rcgs_ | protocols::forge::components::VarLengthBuild | private |
Real typedef | protocols::forge::components::VarLengthBuild | |
recover_original_on_failure() const | protocols::forge::components::VarLengthBuild | inline |
recover_original_on_failure(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
recover_original_on_failure_ | protocols::forge::components::VarLengthBuild | private |
register_options() | protocols::moves::Mover | inlinestatic |
reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
remodel_data_ | protocols::forge::components::VarLengthBuild | private |
RemodelConstraintGeneratorOP typedef | protocols::forge::components::VarLengthBuild | |
RemodelData typedef | protocols::forge::components::VarLengthBuild | |
remove_remodel_constraints(Pose &pose) | protocols::forge::components::VarLengthBuild | protected |
repeat_tail_length_ | protocols::forge::components::VarLengthBuild | private |
reset_status() | protocols::moves::Mover | |
restart_mode() const | protocols::forge::components::VarLengthBuild | inline |
restart_mode(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
restart_mode_ | protocols::forge::components::VarLengthBuild | private |
scorefunction(ScoreFunction const &sfx) | protocols::forge::components::VarLengthBuild | |
scorefunction(ScoreFunctionOP const &sfx) | protocols::forge::components::VarLengthBuild | |
ScoreFunction typedef | protocols::forge::components::VarLengthBuild | |
ScoreFunctionOP typedef | protocols::forge::components::VarLengthBuild | |
set_abego(utility::vector1< String > const &abego) | protocols::forge::components::VarLengthBuild | inline |
set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_starting_non_canonical(Pose &pose) | protocols::forge::components::VarLengthBuild | protected |
set_type(std::string const &setting) | protocols::moves::Mover | inline |
setup_movers_ | protocols::forge::components::VarLengthBuild | private |
setup_remodel_constraints(Pose &pose) | protocols::forge::components::VarLengthBuild | protected |
sfx_ | protocols::forge::components::VarLengthBuild | private |
show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
Size typedef | protocols::forge::components::VarLengthBuild | |
String typedef | protocols::forge::components::VarLengthBuild | |
Strings typedef | protocols::moves::Mover | |
Super typedef | protocols::forge::components::VarLengthBuild | private |
TagCOP typedef | protocols::moves::Mover | |
test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
type(const std::string &type_in) | protocols::moves::Mover | inline |
type() const | protocols::moves::Mover | inline |
use_fullmer() const | protocols::forge::components::VarLengthBuild | inline |
use_fullmer(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
use_fullmer_ | protocols::forge::components::VarLengthBuild | private |
user_provided_movers_ | protocols::forge::components::VarLengthBuild | private |
user_provided_movers_apply_cycle_ | protocols::forge::components::VarLengthBuild | private |
vall_memory_usage() const | protocols::forge::components::VarLengthBuild | inline |
vall_memory_usage(VLB_VallMemoryUsage::Enum const level) | protocols::forge::components::VarLengthBuild | inline |
vall_memory_usage_ | protocols::forge::components::VarLengthBuild | private |
VarLengthBuild() | protocols::forge::components::VarLengthBuild | |
VarLengthBuild(BuildManager const &manager) | protocols::forge::components::VarLengthBuild | |
VarLengthBuild(BuildManager const &manager, RemodelData const &remodel_data) | protocols::forge::components::VarLengthBuild | |
VarLengthBuild(VarLengthBuild const &rval) | protocols::forge::components::VarLengthBuild | |
~VarLengthBuild() override | protocols::forge::components::VarLengthBuild | |