aa_matrices() const | protocols::mean_field::FlexBBDesignMeanField | inline |
aa_matrices_ | protocols::mean_field::FlexBBDesignMeanField | private |
aa_matrix() const | protocols::mean_field::FlexBBDesignMeanField | |
alt_rot_matrix() const | protocols::mean_field::MeanField | inline |
bb_boltz_probs() | protocols::mean_field::FlexBBMeanField | inline |
bb_boltz_probs_ | protocols::mean_field::FlexBBMeanField | protected |
bb_boltz_probs_per_aa() | protocols::mean_field::FlexBBMeanField | inline |
bb_boltz_probs_per_aa_ | protocols::mean_field::FlexBBMeanField | protected |
build_rot_matrix_for_pose(core::Size pose_ind) | protocols::mean_field::MeanField | |
calc_bb_boltz_probs() override | protocols::mean_field::FlexBBDesignMeanField | virtual |
calc_exp_value_aa_matrix() | protocols::mean_field::FlexBBDesignMeanField | |
calc_exp_value_rot_matrix() | protocols::mean_field::FlexBBMeanField | |
converge() | protocols::mean_field::MeanField | |
delete_pose(core::Size pose_ind) override | protocols::mean_field::FlexBBDesignMeanField | virtual |
energies_matrix() const | protocols::mean_field::MeanField | inline |
energy_matrices() const | protocols::mean_field::FlexBBMeanField | inline |
energy_matrix() const | protocols::mean_field::FlexBBMeanField | inline |
exp_aa_matrix_ | protocols::mean_field::FlexBBDesignMeanField | private |
FlexBBDesignMeanField(core::Size const option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > tasks, core::scoring::ScoreFunctionOP scfxn) | protocols::mean_field::FlexBBDesignMeanField | |
FlexBBDesignMeanField(core::Size const option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > tasks, core::scoring::ScoreFunctionOP scfxn, core::Real lambda_mem, core::Real tolerance, core::Real temp, core::Real threshold) | protocols::mean_field::FlexBBDesignMeanField | |
FlexBBDesignMeanField() | protocols::mean_field::FlexBBDesignMeanField | private |
FlexBBDesignMeanField(FlexBBDesignMeanField const &object_to_copy) | protocols::mean_field::FlexBBDesignMeanField | private |
FlexBBMeanField(core::Size const option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > tasks, core::scoring::ScoreFunctionOP scfxn) | protocols::mean_field::FlexBBMeanField | |
FlexBBMeanField(core::Size const option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > tasks, core::scoring::ScoreFunctionOP scfxn, core::Real lambda_mem, core::Real tolerance, core::Real temp, core::Real threshold) | protocols::mean_field::FlexBBMeanField | |
init_option() const | protocols::mean_field::MeanField | inline |
lambda_memory() const | protocols::mean_field::MeanField | inline |
MeanField(core::Size const option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > const &tasks, core::scoring::ScoreFunctionOP scfxn) | protocols::mean_field::MeanField | |
MeanField(core::Size const option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > const &tasks, core::scoring::ScoreFunctionOP scfxn, core::Real lambda_mem, core::Real tolerance, core::Real temp, core::Real threshold) | protocols::mean_field::MeanField | |
num_packed() const | protocols::mean_field::MeanField | |
num_poses() const | protocols::mean_field::MeanField | inline |
operator<<(std::ostream &output, FlexBBDesignMeanField const &object_to_output) | protocols::mean_field::FlexBBDesignMeanField | friend |
operator=(FlexBBDesignMeanField const &object_to_copy) | protocols::mean_field::FlexBBDesignMeanField | private |
process() override | protocols::mean_field::FlexBBDesignMeanField | virtual |
renumber_rotamers() | protocols::mean_field::FlexBBMeanField | |
rot_matrices() const | protocols::mean_field::FlexBBMeanField | inline |
rot_matrix() const override | protocols::mean_field::FlexBBMeanField | virtual |
show(std::ostream &output=std::cout) const | protocols::mean_field::FlexBBDesignMeanField | |
temperature() const | protocols::mean_field::MeanField | inline |
threshold() const | protocols::mean_field::MeanField | inline |
tolerance() const | protocols::mean_field::MeanField | inline |
~FlexBBDesignMeanField() override | protocols::mean_field::FlexBBDesignMeanField | |
~FlexBBMeanField() override | protocols::mean_field::FlexBBMeanField | |
~MeanField() override | protocols::mean_field::MeanField | |