protocols::qsar::scoring_grid::VdwGrid Member List

This is the complete list of members for protocols::qsar::scoring_grid::VdwGrid, including all inherited members.

atom_score(core::conformation::UltraLightResidue const &residue, core::Size atomno, qsarMapOP qsar_map)	protocols::qsar::scoring_grid::VdwGrid	virtual
atom_score(core::conformation::Residue const &residue, core::Size atomno, qsarMapOP qsar_map)	protocols::qsar::scoring_grid::VdwGrid	virtual
cutoff_	protocols::qsar::scoring_grid::VdwGrid	private
deserialize(utility::json_spirit::mObject data)	protocols::qsar::scoring_grid::VdwGrid	virtual
diffuse_ring(core::Vector const &coords, core::Real radius, core::Real width, core::Real magnitude)	protocols::qsar::scoring_grid::SingleGrid
dump_BRIX(std::string const &prefix)	protocols::qsar::scoring_grid::SingleGrid	virtual
fill_with_value(core::Real)	protocols::qsar::scoring_grid::SingleGrid
get_center()	protocols::qsar::scoring_grid::SingleGrid
get_chain()	protocols::qsar::scoring_grid::SingleGrid
get_dimensions()	protocols::qsar::scoring_grid::SingleGrid
get_grid()	protocols::qsar::scoring_grid::SingleGrid
get_max_value() const	protocols::qsar::scoring_grid::SingleGrid
get_min_value() const	protocols::qsar::scoring_grid::SingleGrid
get_pdb_coords(int x, int y, int z)	protocols::qsar::scoring_grid::SingleGrid
get_pdb_coords(core::grid::CartGrid< core::Real >::GridPt gridpt)	protocols::qsar::scoring_grid::SingleGrid
get_point(core::Real x, core::Real y, core::Real z)	protocols::qsar::scoring_grid::SingleGrid
get_point(core::Vector coords)	protocols::qsar::scoring_grid::SingleGrid
get_point_value_list_within_range(core::Real lower_bound, core::Real upper_bound, core::Size stride)	protocols::qsar::scoring_grid::SingleGrid
get_type()	protocols::qsar::scoring_grid::SingleGrid	virtual
grid_name()	protocols::qsar::scoring_grid::VdwGrid	static
grid_to_kin(utility::io::ozstream &out, core::Real min_val, core::Real max_val, core::Size stride)	protocols::qsar::scoring_grid::SingleGrid
GridBase()	protocols::qsar::scoring_grid::GridBase	inline
initialize(core::Vector const &center, core::Real width, core::Real resolution)	protocols::qsar::scoring_grid::SingleGrid	virtual
is_in_grid(core::conformation::UltraLightResidue const &residue)	protocols::qsar::scoring_grid::SingleGrid	virtual
is_in_grid(core::conformation::Residue const &residue)	protocols::qsar::scoring_grid::SingleGrid	virtual
lj_spline_	protocols::qsar::scoring_grid::VdwGrid	private
parse_my_tag(utility::tag::TagCOP tag)	protocols::qsar::scoring_grid::VdwGrid	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::qsar::scoring_grid::VdwGrid	static
refresh(core::pose::Pose const &pose, core::Vector const &center, core::Size const &)	protocols::qsar::scoring_grid::VdwGrid	virtual
refresh(core::pose::Pose const &pose, core::Vector const &center)	protocols::qsar::scoring_grid::VdwGrid	virtual
refresh(core::pose::Pose const &pose, core::Vector const &center, utility::vector1< core::Size >)	protocols::qsar::scoring_grid::VdwGrid	virtual
score(core::conformation::UltraLightResidue const &residue, core::Real const max_score, qsarMapOP qsar_map)	protocols::qsar::scoring_grid::VdwGrid	virtual
score(core::conformation::Residue const &residue, core::Real const max_score, qsarMapOP qsar_map)	protocols::qsar::scoring_grid::VdwGrid	virtual
serialize()	protocols::qsar::scoring_grid::VdwGrid	virtual
set_center(core::Vector center)	protocols::qsar::scoring_grid::SingleGrid
set_chain(char chain)	protocols::qsar::scoring_grid::SingleGrid	virtual
set_distance_sphere_for_atom(core::Real const &atom_shell, core::Vector const &coords, core::Real cutoff)	protocols::qsar::scoring_grid::SingleGrid
set_point(core::Vector const &coords, core::Real value)	protocols::qsar::scoring_grid::SingleGrid
set_ring(core::Vector const &coords, core::Real inner_radius, core::Real outer_radius, core::Real value)	protocols::qsar::scoring_grid::SingleGrid
set_score_sphere_for_atom(numeric::interpolation::spline::InterpolatorOP lj_spline, core::Vector const &coords, core::Real cutoff)	protocols::qsar::scoring_grid::SingleGrid
set_sphere(core::Vector const &coords, core::Real radius, core::Real value)	protocols::qsar::scoring_grid::SingleGrid
set_type(std::string type)	protocols::qsar::scoring_grid::SingleGrid
SingleGrid(std::string type)	protocols::qsar::scoring_grid::SingleGrid
VdwGrid()	protocols::qsar::scoring_grid::VdwGrid
~GridBase()	protocols::qsar::scoring_grid::GridBase	inlinevirtual
~SingleGrid()	protocols::qsar::scoring_grid::SingleGrid	virtual
~VdwGrid()	protocols::qsar::scoring_grid::VdwGrid	virtual