apply(core::pose::Pose &pose) override | protocols::electron_density::DockIntoDensityMover | virtual |
apply_multi(utility::vector1< core::pose::PoseOP > &poses) | protocols::electron_density::DockIntoDensityMover | |
apply_transform(core::pose::Pose &pose, RBfitResult const &transform) | protocols::electron_density::DockIntoDensityMover | |
B_ | protocols::electron_density::DockIntoDensityMover | private |
center_on_middle_ca_ | protocols::electron_density::DockIntoDensityMover | private |
clear_info() | protocols::moves::Mover | inlinevirtual |
clone() const | protocols::moves::Mover | virtual |
cluster_oversample_ | protocols::electron_density::DockIntoDensityMover | private |
cluster_radius_ | protocols::electron_density::DockIntoDensityMover | private |
convolute_single_residue_ | protocols::electron_density::DockIntoDensityMover | private |
create() | protocols::moves::Mover | virtual |
delR_ | protocols::electron_density::DockIntoDensityMover | private |
dens_wt_ | protocols::electron_density::DockIntoDensityMover | private |
density_grid_search(core::Size pose_idx, core::pose::Pose &pose, RBfitResultDB &results) | protocols::electron_density::DockIntoDensityMover | |
do_filter(utility::vector1< core::pose::PoseOP > const &poses, RBfitResultDB &results_in, bool rescore) | protocols::electron_density::DockIntoDensityMover | |
do_filter(RBfitResultDB &results_in) | protocols::electron_density::DockIntoDensityMover | |
do_filter(RefinementResultDB &results_in) | protocols::electron_density::DockIntoDensityMover | |
do_refine_ | protocols::electron_density::DockIntoDensityMover | private |
do_refinement(utility::vector1< core::pose::PoseOP > const &poses, RBfitResultDB &results_in, RefinementResultDB &results_out) | protocols::electron_density::DockIntoDensityMover | |
DockIntoDensityMover() | protocols::electron_density::DockIntoDensityMover | inline |
Filters_map typedef | protocols::moves::Mover | |
fragDens_ | protocols::electron_density::DockIntoDensityMover | private |
fresh_instance() const | protocols::moves::Mover | virtual |
get_additional_output() | protocols::moves::Mover | virtual |
get_current_job() const | protocols::moves::Mover | |
get_current_tag() const | protocols::moves::Mover | inline |
get_input_pose() const | protocols::moves::Mover | |
get_last_move_status() const | protocols::moves::Mover | |
get_name() const override | protocols::electron_density::DockIntoDensityMover | inlinevirtual |
get_native_pose() const | protocols::moves::Mover | |
get_radius(core::pose::Pose const &pose, numeric::xyzVector< core::Real > &com) | protocols::electron_density::DockIntoDensityMover | |
get_self_ptr() const | protocols::moves::Mover | inline |
get_self_ptr() | protocols::moves::Mover | inline |
get_self_weak_ptr() const | protocols::moves::Mover | inline |
get_self_weak_ptr() | protocols::moves::Mover | inline |
get_spectrum(core::pose::Pose const &pose, utility::vector1< core::Real > &pose_1dspec) | protocols::electron_density::DockIntoDensityMover | |
get_type() const | protocols::moves::Mover | inline |
gridStep_ | protocols::electron_density::DockIntoDensityMover | private |
info() | protocols::moves::Mover | inlinevirtual |
info() const | protocols::moves::Mover | inlinevirtual |
laplacian_offset_ | protocols::electron_density::DockIntoDensityMover | private |
last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
map_from_spectrum(utility::vector1< core::Real > const &pose_1dspec, ObjexxFCL::FArray3D< double > &rot) | protocols::electron_density::DockIntoDensityMover | |
max_rot_per_trans_ | protocols::electron_density::DockIntoDensityMover | private |
min_backbone_ | protocols::electron_density::DockIntoDensityMover | private |
mindist_ | protocols::electron_density::DockIntoDensityMover | private |
Mover() | protocols::moves::Mover | |
Mover(std::string type_name) | protocols::moves::Mover | |
Mover(Mover const &other) | protocols::moves::Mover | |
name() | protocols::moves::Mover | inlinestatic |
native_ | protocols::electron_density::DockIntoDensityMover | private |
native_com_ | protocols::electron_density::DockIntoDensityMover | private |
ncyc_ | protocols::electron_density::DockIntoDensityMover | private |
normscores_ | protocols::electron_density::DockIntoDensityMover | private |
nRsteps_ | protocols::electron_density::DockIntoDensityMover | private |
operator=(Mover const &other) | protocols::moves::Mover | |
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
passthrough_ | protocols::electron_density::DockIntoDensityMover | private |
point_radius_ | protocols::electron_density::DockIntoDensityMover | private |
points_defined_ | protocols::electron_density::DockIntoDensityMover | private |
points_to_search_ | protocols::electron_density::DockIntoDensityMover | private |
Pose typedef | protocols::moves::Mover | |
PoseCOP typedef | protocols::moves::Mover | |
poseSphericalSamples(core::pose::Pose const &pose, ObjexxFCL::FArray3D< double > &sigR) | protocols::electron_density::DockIntoDensityMover | |
predefine_search(utility::vector1< numeric::xyzVector< core::Real > > &pts_in) | protocols::electron_density::DockIntoDensityMover | |
print_best_rms(core::pose::Pose const &pose, RBfitResultDB const &results) | protocols::electron_density::DockIntoDensityMover | |
register_options() | protocols::moves::Mover | inlinestatic |
reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
reset_status() | protocols::moves::Mover | |
select_points(core::pose::Pose &pose) | protocols::electron_density::DockIntoDensityMover | |
set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_type(std::string const &setting) | protocols::moves::Mover | inline |
setB(core::Real B) | protocols::electron_density::DockIntoDensityMover | inline |
setCenterOnMiddleCA(bool val) | protocols::electron_density::DockIntoDensityMover | inline |
setClusterOversamp(core::Size cluster_oversample) | protocols::electron_density::DockIntoDensityMover | inline |
setClusterRadius(core::Real cluster_radius) | protocols::electron_density::DockIntoDensityMover | inline |
setConvoluteSingleR(bool convolute_single_residue) | protocols::electron_density::DockIntoDensityMover | inline |
setDelR(core::Real delR) | protocols::electron_density::DockIntoDensityMover | inline |
setDoRefine(bool do_refine) | protocols::electron_density::DockIntoDensityMover | inline |
setFragDens(core::Real fragDens) | protocols::electron_density::DockIntoDensityMover | inline |
setGridStep(core::Size gridStep) | protocols::electron_density::DockIntoDensityMover | inline |
setLaplacianOffset(core::Real laplacian_offset) | protocols::electron_density::DockIntoDensityMover | inline |
setMaxRotPerTrans(core::Size max_rot_per_trans) | protocols::electron_density::DockIntoDensityMover | inline |
setMinBackbone(bool min_backbone) | protocols::electron_density::DockIntoDensityMover | inline |
setMinDist(core::Real mindist) | protocols::electron_density::DockIntoDensityMover | inline |
setNative(core::pose::PoseOP native) | protocols::electron_density::DockIntoDensityMover | |
setNCyc(core::Size ncyc) | protocols::electron_density::DockIntoDensityMover | inline |
setNormScores(bool normscores) | protocols::electron_density::DockIntoDensityMover | inline |
setNRsteps(core::Real nRsteps) | protocols::electron_density::DockIntoDensityMover | inline |
setOutputSilent(std::string silent_out) | protocols::electron_density::DockIntoDensityMover | inline |
setPassThrough(bool passthrough) | protocols::electron_density::DockIntoDensityMover | inline |
setPointRadius(core::Real point_radius) | protocols::electron_density::DockIntoDensityMover | inline |
setSymminfo(DensitySymmInfo const &symminfo) | protocols::electron_density::DockIntoDensityMover | inline |
setTag(std::string tag) | protocols::electron_density::DockIntoDensityMover | inline |
setTopN(core::Real topNtrans, core::Real topNfilter, core::Real topNfinal) | protocols::electron_density::DockIntoDensityMover | inline |
show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
silent_ | protocols::electron_density::DockIntoDensityMover | private |
Strings typedef | protocols::moves::Mover | |
symminfo_ | protocols::electron_density::DockIntoDensityMover | private |
tag_ | protocols::electron_density::DockIntoDensityMover | private |
TagCOP typedef | protocols::moves::Mover | |
test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
topNfilter_ | protocols::electron_density::DockIntoDensityMover | private |
topNfinal_ | protocols::electron_density::DockIntoDensityMover | private |
topNtrans_ | protocols::electron_density::DockIntoDensityMover | private |
type() const | protocols::moves::Mover | inline |
type(const std::string &type_in) | protocols::moves::Mover | inline |
~Mover() override | protocols::moves::Mover | |