| atomic_interaction_cutoff() const | core::scoring::methods::WholeStructureEnergy | inlinevirtual |
| clone() const | core::scoring::methods::SSElementMotifContactEnergy | inlinevirtual |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| EnergyMethod(EnergyMethod const &src) | core::scoring::methods::EnergyMethod | |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const | core::scoring::methods::SSElementMotifContactEnergy | virtual |
| get_ss_elements(const pose::Pose &pose) const | core::scoring::methods::SSElementMotifContactEnergy | |
| get_SSelements_in_contact(Size element, utility::vector1< std::pair< Size, Size > > ssElements, const pose::Pose &pose) const | core::scoring::methods::SSElementMotifContactEnergy | |
| get_ssElements_in_contact_w_threshold(std::multiset< Size > ssElements_in_contact) const | core::scoring::methods::SSElementMotifContactEnergy | |
| indicate_required_context_graphs(utility::vector1< bool > &) const | core::scoring::methods::SSElementMotifContactEnergy | inlinevirtual |
| method_type() const | core::scoring::methods::WholeStructureEnergy | virtual |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| mman_ | core::scoring::methods::SSElementMotifContactEnergy | private |
| parent typedef | core::scoring::methods::SSElementMotifContactEnergy | |
| prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | virtual |
| score_types() const | core::scoring::methods::EnergyMethod | inline |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | protected |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| show_additional_info(std::ostream &, pose::Pose &, bool) const | core::scoring::methods::EnergyMethod | virtual |
| SSElementMotifContactEnergy() | core::scoring::methods::SSElementMotifContactEnergy | |
| update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | virtual |
| version() const | core::scoring::methods::SSElementMotifContactEnergy | virtual |
| which_ssElement(Size res, utility::vector1< std::pair< Size, Size > > ssElements) const | core::scoring::methods::SSElementMotifContactEnergy | |
| WholeStructureEnergy(EnergyMethodCreatorOP) | core::scoring::methods::WholeStructureEnergy | |
| ~EnergyMethod() | core::scoring::methods::EnergyMethod | virtual |
| ~WholeStructureEnergy() | core::scoring::methods::WholeStructureEnergy | inlinevirtual |
1.8.7