add_instruction(BuildInstructionOP bi, String const &aa_during_design_refine=String()) | protocols::forge::components::BDR | |
allowed_surface_aa() | protocols::forge::components::BDR | privatestatic |
apply(Pose &pose) | protocols::forge::components::BDR | virtual |
BDR() | protocols::forge::components::BDR | |
BDR(BDR const &rval) | protocols::forge::components::BDR | |
BuildInstructionOP typedef | protocols::forge::components::BDR | |
BuildManager typedef | protocols::forge::components::BDR | |
centroid_build(Pose &pose) | protocols::forge::components::BDR | private |
centroid_loop_mover_str() const | protocols::forge::components::BDR | inline |
centroid_loop_mover_str(String const &loop_mover_str) | protocols::forge::components::BDR | inline |
centroid_loop_mover_str_ | protocols::forge::components::BDR | private |
centroid_scorefunction() const | protocols::forge::components::BDR | |
centroid_scorefunction(ScoreFunction const &sfx) | protocols::forge::components::BDR | |
centroid_scorefunction(ScoreFunctionOP sfx) | protocols::forge::components::BDR | |
centroid_sfx_ | protocols::forge::components::BDR | private |
clear_info() | protocols::moves::Mover | inlinevirtual |
clone() const | protocols::forge::components::BDR | virtual |
create() | protocols::moves::Mover | virtual |
create_directed_dependency(BuildInstructionOP u, BuildInstructionOP v) | protocols::forge::components::BDR | |
design_info_ | protocols::forge::components::BDR | private |
design_refine(Pose &pose) | protocols::forge::components::BDR | private |
DesignInfo typedef | protocols::forge::components::BDR | |
dr_cycles() const | protocols::forge::components::BDR | inline |
dr_cycles(Size const cycles) | protocols::forge::components::BDR | inline |
dr_cycles_ | protocols::forge::components::BDR | private |
Filters_map typedef | protocols::moves::Mover | |
fresh_instance() const | protocols::forge::components::BDR | virtual |
fullatom_scorefunction() const | protocols::forge::components::BDR | |
fullatom_scorefunction(ScoreFunction const &sfx) | protocols::forge::components::BDR | |
fullatom_scorefunction(ScoreFunctionOP sfx) | protocols::forge::components::BDR | |
fullatom_sfx_ | protocols::forge::components::BDR | private |
generic_taskfactory() | protocols::forge::components::BDR | private |
get_additional_output() | protocols::moves::Mover | virtual |
get_current_job() const | protocols::moves::Mover | |
get_current_tag() const | protocols::moves::Mover | inline |
get_input_pose() const | protocols::moves::Mover | |
get_last_move_status() const | protocols::moves::Mover | |
get_name() const | protocols::forge::components::BDR | virtual |
get_native_pose() const | protocols::moves::Mover | |
get_self_ptr() const | protocols::moves::Mover | inline |
get_self_ptr() | protocols::moves::Mover | inline |
get_self_weak_ptr() const | protocols::moves::Mover | inline |
get_self_weak_ptr() | protocols::moves::Mover | inline |
get_type() const | protocols::moves::Mover | inline |
info() | protocols::moves::Mover | inlinevirtual |
info() const | protocols::moves::Mover | inlinevirtual |
Interval typedef | protocols::forge::components::BDR | |
last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
loops_buns_polar_calc_name() | protocols::forge::components::BDR | inlinestatic |
manager_ | protocols::forge::components::BDR | private |
max_linear_chainbreak() const | protocols::forge::components::BDR | inline |
max_linear_chainbreak(Real const threshold) | protocols::forge::components::BDR | inline |
max_linear_chainbreak_ | protocols::forge::components::BDR | private |
Mover() | protocols::moves::Mover | |
Mover(std::string type_name) | protocols::moves::Mover | |
Mover(Mover const &other) | protocols::moves::Mover | |
MoverOP typedef | protocols::forge::components::BDR | |
name() | protocols::moves::Mover | inlinestatic |
neighborhood_buns_polar_calc_name() | protocols::forge::components::BDR | inlinestatic |
neighborhood_calc_name() | protocols::forge::components::BDR | inlinestatic |
operator=(BDR const &rval) | protocols::forge::components::BDR | private |
protocols::moves::Mover::operator=(Mover const &other) | protocols::moves::Mover | |
Original2Modified typedef | protocols::forge::components::BDR | |
OriginalInterval2DesignString typedef | protocols::forge::components::BDR | |
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
Pose typedef | protocols::forge::components::BDR | |
PoseCOP typedef | protocols::moves::Mover | |
process_continuous_design_string(Interval const &original_interval, String const &design_str, Original2Modified const &original2modified_interval_endpoints, TaskFactoryOP design_tf) | protocols::forge::components::BDR | private |
process_insert_design_string(Interval const &original_interval, String const &design_str, Original2Modified const &original2modified_interval_endpoints, TaskFactoryOP design_tf) | protocols::forge::components::BDR | private |
Real typedef | protocols::forge::components::BDR | |
redesign_loop_neighborhood() const | protocols::forge::components::BDR | inline |
redesign_loop_neighborhood(bool const flag) | protocols::forge::components::BDR | inline |
redesign_loop_neighborhood_ | protocols::forge::components::BDR | private |
register_options() | protocols::moves::Mover | inlinestatic |
reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
reset_status() | protocols::moves::Mover | |
resfile() const | protocols::forge::components::BDR | inline |
resfile(String const &filename) | protocols::forge::components::BDR | inline |
resfile_ | protocols::forge::components::BDR | private |
ScoreFunction typedef | protocols::forge::components::BDR | |
ScoreFunctionOP typedef | protocols::forge::components::BDR | |
set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
set_type(std::string const &setting) | protocols::moves::Mover | inline |
show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
Size typedef | protocols::forge::components::BDR | |
String typedef | protocols::forge::components::BDR | |
Strings typedef | protocols::moves::Mover | |
Super typedef | protocols::forge::components::BDR | private |
TagCOP typedef | protocols::moves::Mover | |
TaskFactoryOP typedef | protocols::forge::components::BDR | |
test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
type() const | protocols::moves::Mover | inline |
type(const std::string &type_in) | protocols::moves::Mover | inline |
use_fullmer() const | protocols::forge::components::BDR | inline |
use_fullmer(bool const flag) | protocols::forge::components::BDR | inline |
use_fullmer_ | protocols::forge::components::BDR | private |
use_sequence_bias() const | protocols::forge::components::BDR | inline |
use_sequence_bias(bool const flag) | protocols::forge::components::BDR | inline |
use_sequence_bias_ | protocols::forge::components::BDR | private |
vlb_ | protocols::forge::components::BDR | private |
~BDR() | protocols::forge::components::BDR | virtual |
~Mover() override | protocols::moves::Mover | |