| __pad0__ | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | |
| atom_is_acceptor(conformation::Residue const &rsd, Size const atom) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | private |
| atom_is_donor_h(conformation::Residue const &rsd, Size const atom) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | private |
| atom_is_valid_base(conformation::Residue const &rsd, Size const atom) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | private |
| atomic_interaction_cutoff() const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | virtual |
| clone() const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | virtual |
| ContextDependentOneBodyEnergy(EnergyMethodCreatorOP) | core::scoring::methods::ContextDependentOneBodyEnergy | |
| defines_dof_derivatives(pose::Pose const &p) const | core::scoring::methods::OneBodyEnergy | virtual |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| defines_intrares_energy(EnergyMap const &) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | inlinevirtual |
| defines_score_for_residue(conformation::Residue const &) const | core::scoring::methods::OneBodyEnergy | virtual |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| EnergyMethod(EnergyMethod const &src) | core::scoring::methods::EnergyMethod | |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const | core::scoring::methods::EnergyMethod | virtual |
| eval_residue_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) const | core::scoring::methods::OneBodyEnergy | virtual |
| eval_residue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) const | core::scoring::methods::OneBodyEnergy | virtual |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_total_energy(pose::Pose &pose, ScoreFunction const &sfxn, EnergyMap &total_energy) const | core::scoring::methods::EnergyMethod | virtual |
| get_atom_atom_occ_solvation(Size const don_h_atom, Size const don_base_atom, conformation::Residue const &don_rsd, Size const occ_atom, conformation::Residue const &occ_rsd, Real &energy) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | private |
| get_cos_angle(Vector const &base_atom_xyz, Vector const &polar_atom_xyz, Vector const &occluding_atom_xyz) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | private |
| indicate_required_context_graphs(utility::vector1< bool > &) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | inlinevirtual |
| method_type() const | core::scoring::methods::ContextDependentOneBodyEnergy | virtual |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| occ_hbond_sol_database_ | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | private |
| OccludedHbondSolEnergy_onebody(methods::EnergyMethodOptions const &options, bool const verbose=false) | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | |
| OccludedHbondSolEnergy_onebody(OccludedHbondSolEnergy_onebody const &src) | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | |
| OneBodyEnergy(EnergyMethodCreatorOP) | core::scoring::methods::OneBodyEnergy | |
| parent typedef | core::scoring::methods::ContextDependentOneBodyEnergy | |
| prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | virtual |
| requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) const | core::scoring::methods::OneBodyEnergy | virtual |
| requires_a_setup_for_scoring_for_residue_opportunity(pose::Pose const &pose) const | core::scoring::methods::OneBodyEnergy | virtual |
| res_res_occ_sol_one_way(conformation::Residue const &polar_rsd, conformation::Residue const &occ_rsd) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | private |
| residue_energy(conformation::Residue const &polar_rsd, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | virtual |
| residue_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap &emap) const | core::scoring::methods::OneBodyEnergy | virtual |
| score_types() const | core::scoring::methods::EnergyMethod | inline |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | protected |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | virtual |
| setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const | core::scoring::methods::OneBodyEnergy | virtual |
| setup_for_minimizing(pose::Pose &pose, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | virtual |
| setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &, ScoreFunction const &, kinematics::MinimizerMapBase const &, ResSingleMinimizationData &) const | core::scoring::methods::OneBodyEnergy | virtual |
| setup_for_packing(pose::Pose &pose, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | virtual |
| setup_for_scoring(pose::Pose &pose, ScoreFunction const &) const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | virtual |
| setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const | core::scoring::methods::OneBodyEnergy | virtual |
| show_additional_info(std::ostream &, pose::Pose &, bool) const | core::scoring::methods::EnergyMethod | virtual |
| update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | virtual |
| use_extended_residue_energy_interface() const | core::scoring::methods::OneBodyEnergy | virtual |
| verbose_ | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | private |
| version() const | core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody | privatevirtual |
| ~EnergyMethod() | core::scoring::methods::EnergyMethod | virtual |
| ~OneBodyEnergy() | core::scoring::methods::OneBodyEnergy | virtual |
1.8.7