I have been trying to do ligand docking using the tutorial provided here (https://www.rosettacommons.org/demos/latest/tutorials/ligand_docking/ligand_docking_tutorial) and try to dock some of my molecules onto a protein. Before docking, I relaxed the receptors. The dock does not place the ligands into any pocket. It just keeps it floating on the surface. Also, for some of the molecules, the docking does not even happen. Please see the pictures attached. I used the exact same parameters provided in the tutorial. Is there a way to make it look for pockets globally and tune anything so that the protocol can find deep pockets? We ran the same simulations using Autodock and the autodock actually docked the ligands into the pockets.