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Comparative Modeling Tutorial Script not working

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Comparative Modeling Tutorial Script not working

Hi All,

I am trying the tutorial of Comparative Modeling using Rosetta and I am not able to run this script  (<path-to-Rosetta>/Rosetta/demos/tutotial/rosetta_cm/scripts/ 2RH1_ISOLATED A). The "path-to-rosetta" in my Mac is "Applications" and also I have the latest python version. Does the scripting change with python versions as well?? Any help in this regard is greatly appreciated.


Srinivasan Krishnan

Post Situation: 
Thu, 2017-09-21 12:00

What is the error message that you are getting?

Sun, 2017-10-08 18:47


The error message I get is "Directory not found". But I found this Nat Protocol paper (Combs SA et al. 2013) where they use the following script (highligted in black)- /Applications/rosetta_bin_mac_2017.08.59291_bundle/tools/protein_tools/scripts/ 2RH1_ISOLATED.pdb A  So the "protein_tools" was missing from the tutorial script.


Tue, 2017-10-24 10:56

Re: "latest python version" -- note that many of the Python scripts in Rosetta are written for Python2, not Python3, so you may need to run them with `python2.7` rather than `python3.6`. 

(If your OS is one of the few which flouts the Python standard and aliases plain `python` to a Python3 version, you may need to explcitly reference `python2.7` rather than plain `python`. -- I don't think this is the case for Macs, though.)

Tue, 2017-10-10 09:22


The Mac I use have Python version 2.7.

Tue, 2017-10-24 10:58