I tried using the Rosetta RNA tertiary structure modeling pipeline as described in your article "Modeling complex RNA tertiary folds with Rosetta."
My build is correct.
But every time I try to run
helix_preassemble_setup.py -secstruct sec.txt -fasta fasta.fasta
I am getting error as
subprocess.check_call([str(elem) for elem in cmdline.split()])
File "/usr/lib/python2.7/subprocess.py", line 185, in check_call
retcode = call(*popenargs, **kwargs)
File "/usr/lib/python2.7/subprocess.py", line 172, in call
return Popen(*popenargs, **kwargs).wait()
File "/usr/lib/python2.7/subprocess.py", line 394, in __init__
File "/usr/lib/python2.7/subprocess.py", line 1047, in _execute_child
OSError: [Errno 2] No such file or directory
going back to the code, in line 75,
"rna_denovo -score:weights stepwise/rna/rna_res_level_energy4.wts -minimize_rna true -use_legacy_job_distributor true -restore_talaris_behavior true "
this rna_denovo is called.
But, in rosetta bin there is no .exe called rna_denovo, instead I found,
not sure, why is name mismatch and how to call rna_denovo.
So my pipeline is not working.
Can you help me resolving this issue?