I am contacting you because I am getting an error in results with Rosetta. Successfully finished protein-protein docking. I can see in the output that following lines complaining about missing atoms. I have prepared protein in ICM, Molsoft. I checked the input file those I have given as input.pdb, there were no missing any CB atoms in all amino acid. Docking finished successfully and generated score value. Do you think this missing atom will make any impact in score value? Let me know how can solve this problem.
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core.pack.pack_missing_sidechains: packing residue number 1 because of missing atom number 5 atom name CB
core.pack.pack_missing_sidechains: packing residue number 2 because of missing atom number 5 atom name CB
core.pack.pack_missing_sidechains: packing residue number 3 because of missing atom number 5 atom name CB
core.pack.pack_missing_sidechains: packing residue number 4 because of missing atom number 5 atom name CB
core.pack.pack_missing_sidechains: packing residue number 5 because of missing atom number 5 atom name CB
core.pack.pack_missing_sidechains: packing residue number 6 because of missing atom number 5 atom name CB
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Thanks in advance for your answer.