I use snugDocking to Dock different antibody- antigens. I wonder how could I determine good binding vs bad binding from the result web page.
I am currently decide by look at 1. interface score 2, similarity of top 10 models. If the interface score is low and top 10 models have a couples model in similar position, I assume it is good binding, otherwise It isn't
give an example:
https://rosie.graylab.jhu.edu/snug_dock/viewjob/70005 I assume the binding is good
https://rosie.graylab.jhu.edu/snug_dock/viewjob/70015 I assume the binding is not very good.
Is this method correct?
Thanks and regards