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incomplete installation or something else

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incomplete installation or something else


My pyrosetta do not have rosetta/bin or pyrosetta/bin. So I can not run match.linuxgccrelease and so on. why?

Thanks for any help!


Post Situation: 
Fri, 2019-06-14 00:49

PyRosetta does not include Rosetta apps.  Most applications, however, are wrapped in a mover. The matcher can be accessed in PyRosetta through rosetta.protocols.match, but your best bet is to install vanilla Rosetta. 

Fri, 2019-06-14 07:40

Thanks for your reply!

My pyrosetta version is pyrosetta4. release.python27. ubuntu.release-224 and the system is Windows 10. My pyrosetta does not have rosetta.protocols.match too. How can I add the protocols or movers in pyrosetta? 



Sun, 2019-06-16 17:47

First, are you runing Ubuntu in an emulator?  

You have to do:

from rosetta import *

from rosetta.protocols.match import *


I highly recommend you not use PyRosetta for this task as it will be tricky to get the same functionality as the app. 

Mon, 2019-06-17 14:10

Yes, I run Ubuntu in ipython. And I try the commands as you provided.

You know that the directory is important for the running of the command, however, as a beginner,  I can not find the directory of the command match.

If the pyrosetta is not fit for this task as you said, do you think the pyrosetta toolkit was a better choice ?  or is rosetta app the only choice?

Thank you very much!

Mon, 2019-06-17 17:51

Hi.  THere is no directory - you must import that (rosetta.protocols.match.MatchMover) in python.  Yes, as a beginner, I would use the app. 

Tue, 2019-06-18 08:31