Dear caretakers and experts,
When using RNP Structure i have a question regarding
-convert_protein_CEN false
-FA_low_res_rnp_scoring true
-cycles XXXX
In Readme file it says cycles should be 2 times the RNA but for the tutorial 1000 cycles were used for a relatively short rna. How many cycles should i then really use? 1000 as a minimum?
The other two are related to precision. Would converting to CEN during low res assembly and using other scoring be more precise? When not minimizing RNA structure should i use rnp_pack_first and how many rnp_high_res_cycles should i use as well for a high precision production run of around 7-10 RNA residues (default or increase?)?
When minimizing should i use rnp_pack_first in production runs and how many rnp_high_res_cycles?
note: this will be quite useful for everyone who is just starting with this tool like me.