Hi ROSIE and FARFAR2 team,
I used FARFAR2 to test the 3D structure prediction of several RNAs two weeks ago with native PDB uploaded. But all the jobs were finally dead with the error message "2-rescore_to_native_or_lowest". Could you tell me why this happened? You can find the sequence, 2D structure, and native PDB in the attachment.
Another problem is that recently I cannot submit jobs using FARFAR2. It stopped in the process "Submitting FARFAR2 job..." and did not proceed any more. I tested Chrome and Firefox web browser, but neither of them worked.
Thanks,
Jun
| Attachment | Size |
|---|---|
 1a60.seq_.txt | 58 bytes |
| 1a60.2d.txt | 45 bytes |
 1a60.pdb | 108.01 KB |
Category:
Post Situation:
There may be a bug you've caught with handling of a supplied native PDB. I will debug this and push a fix over the next couple days. (We made a number of upgrades in recent days that may have introduced new issues.)
Thanks for using the server!
Hi,
I cannot submit any jobs to FarFar2 using the option:
"Use [almost] any options available to command line FARFAR2, including local template structures, "general" secondary structure (allowing noncanonical pairs), chemical mapping data, and more."
Thank you!!
Hi,
I uplodad two RNA sequences in to farfar2 to get RNS three dimensional structures and after three days the running failed for both sequences without any
Error message. I did not submit secondary structues of RNA, so that might couse the error?
Thanks,
Mehdi
Hello,
The rosie-2 server seems to have stopped to start new job since 2022/09/28 13:28. I there any reason ? Is there a date for return to normal function ?
Thanks