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antibody_numbering_converter cannot recognize the IMGT scheme

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antibody_numbering_converter cannot recognize the IMGT scheme

To whom it may concern:

Hi I want to convert my antibody structure from Chothia to IMGT. I use the following command and get an error "ERROR: Illegal value specified for option -antibody:output_ab_scheme : IMGT". I am wondering is the IMGT scheme already cancelled in the number converter program? This is a 2019.35.60890 version.

/home/rosetta_bin_linux_2019.35.60890_bundle/main/source/bin/antibody_numbering_converter.linuxgccrelease -input_ab_scheme Chothia -output_ab_scheme IMGT -s 1ahw_chothia.pdb


Best regards,


Post Situation: 
Sat, 2020-02-29 23:12

This should work - but there may be a problem in the pre-processor for the options system.  It is indeed coded in there.

For now, if you use IMGT_Scheme instead of IMGT, it should work.

Sun, 2020-03-01 07:27

Use IGMT_Scheme - and any time you use the coverter for now, put the _Scheme at the end.  I'll work to debug why the ones without the _Scheme on the end are tripping up the options system.

Sun, 2020-03-01 07:31

Let me update,  change from -output_ab_scheme IMGT to -output_ab_scheme IMGT_Scheme works fine.

Sun, 2020-03-01 12:40

Awesome. Thanks for the update! I'm looking into how to fix it generally.  Hopefully will have it fixed sometime soon.

Sun, 2020-03-01 14:54