I'd like to do something similar to regular Rosetta fold-and-dock but in PyRosetta. I've looked at D060_Folding.py and D100_Docking.py examples and while I (mostly) understand what each is doing, I have no idea how to combine them.
How to get a foldtree with symmetry? (in my case it's just simple C3)
How to combine folding and docking? Just alternate calls to folding.apply(test_pose) and dock_prot.apply(test_pose)? (It can't be that simple...)
It would be really nice to have an official fold-and-dock example - if someone can get me started I can build it up into a complete script.