Hello. I am wondering how many iterations is enough for remodel? Its a de-novo C-terminal extension: loop + helix of about 30 residues.
-in:file:s p_final.pdb
-remodel:blueprint final.blp
-remodel:num_trajectory ????
-remodel:save_top 5
-overwrite
-remodel:checkpoint
-out:file:scorefile final.sc
-ex1
-ex2
-hb_srbb 1.0
-remodel:use_pose_relax
-ignore_zero_occupancy false
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