Hello, I need some help.
I have no residues error during my docking process. But refining and cleaning worked well with my PDB file.
Also, 1 year ago, docking process worked well with same PDB file and older version of rosetta.
I don't know why it happened.
My PDB file is attatched. please help me.
It is my rosetta crash log.
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.08+release.cb1caba
[COMMIT_DATE]: 2020-02-21T14:46:08.581859
[APPLICATION]: ./bin/docking_protocol.static.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-16)"
[STDLIB]: libstdc++ version 20150623
[START_OPTIONS]
-in:file:s=/mnt/c/phyreubi/Q00987.clean.pdb /mnt/c/phyreubi/Q09472.clean.pdb -out:path:all=/mnt/e/e3dock/ -docking:randomize1 -docking:randomize2 -docking:dock_pert=3 8
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
[0x3a9205f]
[0x5fe61e3]
[0x608c6c6]
[0x4653480]
[0x46535f0]
[0x1bdecbd]
[0x1be79f1]
[0x1ba009a]
[0x1ba1a82]
[0x393d284]
[0x393eeb1]
[0x39d8438]
[0x630e9c]
[0x411e42]
[0x65819c4]
[0x630aad]
[END_BACKTRACE]
[FILE]: src/core/pose/util.cc
[LINE]: 1423
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: Cannot compute center of mass of zero residues!
[END_MESSAGE]
[END_CRASH_REPORT]
| Attachment | Size |
|---|---|
 Q00987.clean_.pdb | 305.17 KB |
| Q09472.clean_.pdb | 400.17 KB |